BLASTX nr result

ID: Glycyrrhiza24_contig00027689 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00027689
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003598615.1| Chromatin remodeling complex subunit, partia...    83   5e-32
ref|XP_003539248.1| PREDICTED: F-box protein At3g54460-like [Gly...    83   2e-25
ref|XP_003522244.1| PREDICTED: F-box protein At3g54460-like [Gly...    76   5e-24

>ref|XP_003598615.1| Chromatin remodeling complex subunit, partial [Medicago truncatula]
           gi|355487663|gb|AES68866.1| Chromatin remodeling complex
           subunit, partial [Medicago truncatula]
          Length = 651

 Score = 83.2 bits (204), Expect(2) = 5e-32
 Identities = 38/60 (63%), Positives = 48/60 (80%)
 Frame = +3

Query: 6   RDDDNHEHYSKRSKLMDPGQKITKPQDSCSVQENKSPVDACFEESMPASRCTRRLSRIKK 185
           R ++NH+  S+R+KL++P Q+ITKP DSCSV E+ SP DAC EE  PASRCTR LSR+KK
Sbjct: 422 RSNENHDFSSERAKLLNPDQEITKPHDSCSVGEDTSPPDACSEEYSPASRCTRSLSRVKK 481



 Score = 79.7 bits (195), Expect(2) = 5e-32
 Identities = 42/57 (73%), Positives = 46/57 (80%)
 Frame = +2

Query: 179 KENLYFTDEEEAMISKERKVVERPIKTKHASDVASCVSQNKLVDTSYRCEQSYKWPG 349
           K+NLYFT +EEAMIS  R+V +R IKTKHASDVAS VSQNKLVDTSY   QSYK  G
Sbjct: 480 KKNLYFTYDEEAMISNGRRVGKRSIKTKHASDVASHVSQNKLVDTSYGSRQSYKLHG 536


>ref|XP_003539248.1| PREDICTED: F-box protein At3g54460-like [Glycine max]
          Length = 1329

 Score = 82.8 bits (203), Expect(2) = 2e-25
 Identities = 39/61 (63%), Positives = 51/61 (83%)
 Frame = +3

Query: 3   SRDDDNHEHYSKRSKLMDPGQKITKPQDSCSVQENKSPVDACFEESMPASRCTRRLSRIK 182
           SR +DNH++ SKR++L+DP Q+ITK  DSCS +ENKSPVDACF+ESM +++ T  LSRIK
Sbjct: 418 SRTNDNHDYSSKRARLIDPDQQITKLHDSCSREENKSPVDACFKESMHSNQFTGSLSRIK 477

Query: 183 K 185
           K
Sbjct: 478 K 478



 Score = 58.2 bits (139), Expect(2) = 2e-25
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 11/66 (16%)
 Frame = +2

Query: 179 KENLYFTDEEEAMISKERKVVERPIKTKHASDVASCVSQNK-----------LVDTSYRC 325
           K+NL+FT E+EAMISKER++ E  IK KHA DV S VSQNK             DT  +C
Sbjct: 477 KKNLHFTFEDEAMISKEREIGEGLIKAKHALDVTSHVSQNKSPGKPKGDCFEYNDTWIQC 536

Query: 326 EQSYKW 343
           +  +KW
Sbjct: 537 DACHKW 542


>ref|XP_003522244.1| PREDICTED: F-box protein At3g54460-like [Glycine max]
          Length = 1311

 Score = 76.3 bits (186), Expect(2) = 5e-24
 Identities = 36/61 (59%), Positives = 49/61 (80%)
 Frame = +3

Query: 3   SRDDDNHEHYSKRSKLMDPGQKITKPQDSCSVQENKSPVDACFEESMPASRCTRRLSRIK 182
           SR +DNH++ SKR++L  P Q+I+K  DSCS +ENKSPVDACF+E M +++ T+ LSRIK
Sbjct: 412 SRTNDNHDYSSKRARLTYPDQQISKLHDSCSREENKSPVDACFKEYMHSNQFTKSLSRIK 471

Query: 183 K 185
           K
Sbjct: 472 K 472



 Score = 59.7 bits (143), Expect(2) = 5e-24
 Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 11/66 (16%)
 Frame = +2

Query: 179 KENLYFTDEEEAMISKERKVVERPIKTKHASDVASCVSQNKL-----------VDTSYRC 325
           K++L+FT EEEAMI KER++ E  IK KHASDV S VSQNKL            DT  +C
Sbjct: 471 KKSLHFTFEEEAMIFKEREIGEGLIKAKHASDVTSHVSQNKLPGKPKGDRFEYSDTWIQC 530

Query: 326 EQSYKW 343
           +  +KW
Sbjct: 531 DACHKW 536


Top