BLASTX nr result

ID: Glycyrrhiza24_contig00027422 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00027422
         (524 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|2...   203   1e-50
ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuc...   197   6e-49
ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotei...   197   6e-49
ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotei...   197   6e-49
emb|CBI36671.3| unnamed protein product [Vitis vinifera]              197   1e-48

>ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1|
           predicted protein [Populus trichocarpa]
          Length = 2157

 Score =  203 bits (516), Expect = 1e-50
 Identities = 103/135 (76%), Positives = 113/135 (83%), Gaps = 1/135 (0%)
 Frame = -2

Query: 403 MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGRIDPRSFGDRAF 224
           MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPE+LWGRIDPRSFGDRA+
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGRIDPRSFGDRAY 60

Query: 223 RGRPPELDQ-ANAARKKKEXXXXXXXXXXXXXXXXXXLQEESVLTATDDGVYQPKTKETR 47
           RGRP ELD+  N A++KK+                  L+EESVLT+T++GVYQPKTKETR
Sbjct: 61  RGRPAELDEKINKAKRKKKERDAVSEAGPTRQAKRRRLREESVLTSTEEGVYQPKTKETR 120

Query: 46  AAYEAMLSVIQQQLG 2
           AAYEAMLSVIQQQLG
Sbjct: 121 AAYEAMLSVIQQQLG 135


>ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein
           200 kDa helicase-like [Cucumis sativus]
          Length = 2175

 Score =  197 bits (502), Expect = 6e-49
 Identities = 100/135 (74%), Positives = 112/135 (82%), Gaps = 1/135 (0%)
 Frame = -2

Query: 403 MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGRIDPRSFGDRAF 224
           MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+G+IDP+SFGDRA+
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAY 60

Query: 223 RGRPPELDQ-ANAARKKKEXXXXXXXXXXXXXXXXXXLQEESVLTATDDGVYQPKTKETR 47
           RGRPPELD+    +++KK+                  LQEESVLT+T++GVY PKTKETR
Sbjct: 61  RGRPPELDEKLKKSKRKKKELDPIAEPQPSRQGKRRRLQEESVLTSTEEGVYMPKTKETR 120

Query: 46  AAYEAMLSVIQQQLG 2
           AAYEAMLSVIQQQLG
Sbjct: 121 AAYEAMLSVIQQQLG 135


>ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
           [Cucumis sativus]
          Length = 2175

 Score =  197 bits (502), Expect = 6e-49
 Identities = 100/135 (74%), Positives = 112/135 (82%), Gaps = 1/135 (0%)
 Frame = -2

Query: 403 MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGRIDPRSFGDRAF 224
           MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+G+IDP+SFGDRA+
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAY 60

Query: 223 RGRPPELDQ-ANAARKKKEXXXXXXXXXXXXXXXXXXLQEESVLTATDDGVYQPKTKETR 47
           RGRPPELD+    +++KK+                  LQEESVLT+T++GVY PKTKETR
Sbjct: 61  RGRPPELDEKLKKSKRKKKELDPIAEPQPSRQGKRRRLQEESVLTSTEEGVYMPKTKETR 120

Query: 46  AAYEAMLSVIQQQLG 2
           AAYEAMLSVIQQQLG
Sbjct: 121 AAYEAMLSVIQQQLG 135


>ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
           [Glycine max]
          Length = 2183

 Score =  197 bits (502), Expect = 6e-49
 Identities = 100/137 (72%), Positives = 110/137 (80%), Gaps = 3/137 (2%)
 Frame = -2

Query: 403 MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGRIDPRSFGDRAF 224
           MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWG+IDP+SFGDRA+
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAY 60

Query: 223 RGRPPELD---QANAARKKKEXXXXXXXXXXXXXXXXXXLQEESVLTATDDGVYQPKTKE 53
           RGRPPELD   +    +KKK+                  +Q +SVL+A+DDGVYQPKTKE
Sbjct: 61  RGRPPELDEKLEKAKNKKKKKDRDAAADDAAAVPSKRRRVQHDSVLSASDDGVYQPKTKE 120

Query: 52  TRAAYEAMLSVIQQQLG 2
           TRAAYEAMLSVIQ QLG
Sbjct: 121 TRAAYEAMLSVIQNQLG 137


>emb|CBI36671.3| unnamed protein product [Vitis vinifera]
          Length = 1405

 Score =  197 bits (500), Expect = 1e-48
 Identities = 99/136 (72%), Positives = 112/136 (82%), Gaps = 2/136 (1%)
 Frame = -2

Query: 403 MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGRIDPRSFGDRAF 224
           MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+G+IDP++FGDRA+
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAY 60

Query: 223 RGRPPELDQ--ANAARKKKEXXXXXXXXXXXXXXXXXXLQEESVLTATDDGVYQPKTKET 50
           RGRPPELD+    + RKK+                   +QEESVL++T++GVYQPKTKET
Sbjct: 61  RGRPPELDEKLKKSKRKKEREPQNASEPVLSRQSKRRRIQEESVLSSTEEGVYQPKTKET 120

Query: 49  RAAYEAMLSVIQQQLG 2
           RAAYEAMLSVIQQQLG
Sbjct: 121 RAAYEAMLSVIQQQLG 136


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