BLASTX nr result
ID: Glycyrrhiza24_contig00027290
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00027290
(638 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-... 294 1e-77
ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|2... 219 4e-55
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [... 214 8e-54
ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-... 202 6e-50
gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida] 181 1e-43
>ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max]
Length = 1070
Score = 294 bits (752), Expect = 1e-77
Identities = 160/204 (78%), Positives = 172/204 (84%)
Frame = +2
Query: 2 DELGRGTSTHDGMAIAYATLHYLLKQKKCIVLFVTHYPKIADLGTEFPGLVAAYHVSHLT 181
DELGRGTSTHDGMAIA+ATLHYLLKQK+ +VLFVTHYPKIA L TEFPG VAAYHVSHL
Sbjct: 870 DELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIASLATEFPGSVAAYHVSHLI 929
Query: 182 SHDHASKNSNSNHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALV 361
SHD ASKNSN +H DVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALV
Sbjct: 930 SHD-ASKNSNLDH-DVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALV 987
Query: 362 NNRIHSRLGKEMLLDAPVIDQEQEPHQLMAQPHDCQRQEFCRAYKEFYSNLKAAILDDDH 541
N+RIH R KE+LLD VI QE+E QLMAQ D +EF AYK+FY NLKAA DDD
Sbjct: 988 NSRIHGRSTKELLLDTLVIGQEKE--QLMAQSLDRPHKEFDMAYKDFYLNLKAATEDDDW 1045
Query: 542 AKSFQLLENARNIAKKLIDQCSLY 613
AKSF LLE+AR+IAKKLI + Y
Sbjct: 1046 AKSFHLLEHARSIAKKLIGRSMQY 1069
>ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|222869461|gb|EEF06592.1|
predicted protein [Populus trichocarpa]
Length = 1092
Score = 219 bits (557), Expect = 4e-55
Identities = 118/201 (58%), Positives = 150/201 (74%), Gaps = 3/201 (1%)
Frame = +2
Query: 2 DELGRGTSTHDGMAIAYATLHYLLKQKKCIVLFVTHYPKIADLGTEFPGLVAAYHVSHLT 181
DELGRGTST+DG AIAYATL++LL QK+C+VLFVTHYPKI ++ TEFPG V AYHVS+LT
Sbjct: 894 DELGRGTSTYDGEAIAYATLYHLLDQKRCMVLFVTHYPKIVEIKTEFPGSVGAYHVSYLT 953
Query: 182 SH-DHASKNSNSNHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEAL 358
S + S + EDVTYLYKLVPGVSE+SFGFKVAQLA+LP CI RA +MA++LEA+
Sbjct: 954 SEKSEGAIESTCDTEDVTYLYKLVPGVSEKSFGFKVAQLAELPPSCIRRATIMAARLEAV 1013
Query: 359 VNNRIHSRLGKEMLLDA-PVIDQEQEPHQLMAQPHDCQRQEFCR-AYKEFYSNLKAAILD 532
++ SRLG E LL+ PV QE+ ++ ++ E AY+EF+SNLK+A+ D
Sbjct: 1014 LS----SRLGNEQLLETLPVQQQEEAQENMLRSDVRIEKSEDSTVAYREFFSNLKSAMFD 1069
Query: 533 DDHAKSFQLLENARNIAKKLI 595
DD A+S Q LE AR+IAK+ +
Sbjct: 1070 DDVARSSQFLEKARSIAKEFL 1090
>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
MSH3, putative [Ricinus communis]
Length = 1100
Score = 214 bits (546), Expect = 8e-54
Identities = 121/206 (58%), Positives = 153/206 (74%), Gaps = 8/206 (3%)
Frame = +2
Query: 2 DELGRGTSTHDGMAIAYATLHYLLKQKKCIVLFVTHYPKIADLGTEFPGLVAAYHVSHLT 181
DELGRGTSTHDG AIAYATL +LL+QK+C+VLFVTHYPKIA++ T F V AYHVS+L
Sbjct: 894 DELGRGTSTHDGEAIAYATLCHLLEQKRCMVLFVTHYPKIANIRTGFLNSVGAYHVSYLM 953
Query: 182 SH-DHASKNSNSNHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEAL 358
+ ++ + +S ++EDVTYLYKLVPGVSERSFGFKVAQLAQLP+ CI RA VMA++LE
Sbjct: 954 AEKNNDATDSKFDNEDVTYLYKLVPGVSERSFGFKVAQLAQLPTSCIERATVMAARLEEA 1013
Query: 359 VNNRIHSRLGKEMLLDAPVIDQEQEPHQLMAQP----HDCQ---RQEFCRAYKEFYSNLK 517
++ RI +RL K LL A IDQ QE + + + HD + +E Y++F+ N K
Sbjct: 1014 ISCRIRNRLDKSQLLKALQIDQLQEIQEKIPESPGNFHDKRIENYEELNNTYEKFFLNFK 1073
Query: 518 AAILDDDHAKSFQLLENARNIAKKLI 595
+A+L DD AKSFQ LENAR+IA+ LI
Sbjct: 1074 SALLGDD-AKSFQYLENARSIARALI 1098
>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
Length = 1137
Score = 202 bits (513), Expect = 6e-50
Identities = 115/216 (53%), Positives = 145/216 (67%), Gaps = 18/216 (8%)
Frame = +2
Query: 2 DELGRGTSTHDGMAIAYATLHYLLKQKKCIVLFVTHYPKIADLGTEFPGLVAAYHVSHL- 178
DELGRGTSTHDG+AIAYATLHYLL+ K+C+VLFVTHYPKI D+ EFPG V AYHVS++
Sbjct: 903 DELGRGTSTHDGVAIAYATLHYLLEHKRCMVLFVTHYPKIVDVKNEFPGSVGAYHVSYMM 962
Query: 179 --------TSHDHASKNSNSN-----HEDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCI 319
T D S+ N HEDVTYLYKLVPGVSERSFGFKVAQLAQLPS CI
Sbjct: 963 SQRAMDMDTDTDKTDSKSDKNAQTMDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSSCI 1022
Query: 320 SRAIVMASKLEALVNNRIHSRLGKEMLLDAPVIDQEQEPHQLMAQPHDCQRQEFC----R 487
RA VMA++LEA++ +R+ + ++ L Q Q ++ C R E
Sbjct: 1023 RRANVMAAELEAMIVSRVKNSSAQKTL---------QGSQQSISIQSGCSRAEQIGLEED 1073
Query: 488 AYKEFYSNLKAAILDDDHAKSFQLLENARNIAKKLI 595
A +EF+ +LK+A+ + D +S Q L++AR+IAK+LI
Sbjct: 1074 ACREFFLDLKSALGNADPERSLQFLKHARSIAKELI 1109
>gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida]
Length = 846
Score = 181 bits (458), Expect = 1e-43
Identities = 104/217 (47%), Positives = 138/217 (63%), Gaps = 17/217 (7%)
Frame = +2
Query: 2 DELGRGTSTHDGMAIAYATLHYLLKQKKCIVLFVTHYPKIADLGTEFPGLVAAYHVSHLT 181
DELGRGTSTHDG+AIA+ATL YLL+ KKC+VLFVTHYP+I + EFPG V YHVS+LT
Sbjct: 631 DELGRGTSTHDGVAIAFATLQYLLEHKKCMVLFVTHYPEIVSVKNEFPGSVGPYHVSYLT 690
Query: 182 SHDHASKNSNSNH-------EDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMA 340
S + + SN ED+TYLYKL PGV+ERSFGFKVAQLAQLP CI RAIV+A
Sbjct: 691 SQGDVTGDCRSNEKMNYINSEDITYLYKLAPGVAERSFGFKVAQLAQLPVACIQRAIVIA 750
Query: 341 SKLEALV-NNRIHSRLGKEMLLD--------APVIDQEQEPHQLMAQPHDCQRQEFCRAY 493
+LEA V N SR+ + ++ + +D EP+ A +C Y
Sbjct: 751 GRLEAAVCNYTEQSRIRRSYSINYRQDGCKSSEPVDDVLEPYLSSAGSVNC-IDNSSELY 809
Query: 494 KEFYSNLKAAILDDDHA-KSFQLLENARNIAKKLIDQ 601
+E + N+ A+L+++ + FQ L A+++A +LI +
Sbjct: 810 RELFLNINFALLEENGGDRRFQFLMQAKSLAAQLISR 846