BLASTX nr result

ID: Glycyrrhiza24_contig00026778 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00026778
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779...    47   3e-07
ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat...    47   4e-07
ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat...    47   4e-07
ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat...    47   4e-07
ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    40   5e-07

>ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score = 46.6 bits (109), Expect(2) = 3e-07
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = -3

Query: 120 QFNKILGSLAKTKKHYRTAISLYQQMEFTGIMPDIFTFN 4
           QFNKIL S AK K HY TA+SL  ++E  GI PD+ T N
Sbjct: 61  QFNKILDSFAKMK-HYSTAVSLSHRLELKGIQPDLITLN 98



 Score = 32.3 bits (72), Expect(2) = 3e-07
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -2

Query: 214 HSQPPSTLNVDDAVSSF 164
           HSQPPS  NVDDAVS F
Sbjct: 31  HSQPPSIQNVDDAVSQF 47


>ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 46.6 bits (109), Expect(2) = 4e-07
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = -3

Query: 120 QFNKILGSLAKTKKHYRTAISLYQQMEFTGIMPDIFTFN 4
           QFNKIL S AK K HY TA+SL  ++E  GI PD+ T N
Sbjct: 61  QFNKILDSFAKIK-HYSTAVSLSHRLELKGIQPDLITLN 98



 Score = 32.3 bits (72), Expect(2) = 4e-07
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -2

Query: 214 HSQPPSTLNVDDAVSSF 164
           HSQPPS  NVDDAVS F
Sbjct: 31  HSQPPSIQNVDDAVSQF 47


>ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 46.6 bits (109), Expect(2) = 4e-07
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = -3

Query: 120 QFNKILGSLAKTKKHYRTAISLYQQMEFTGIMPDIFTFN 4
           QFNKIL S AK K HY TA+SL  ++E  GI PD+ T N
Sbjct: 61  QFNKILDSFAKMK-HYSTAVSLSHRLELKGIQPDLITLN 98



 Score = 32.3 bits (72), Expect(2) = 4e-07
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -2

Query: 214 HSQPPSTLNVDDAVSSF 164
           HSQPPS  NVDDAVS F
Sbjct: 31  HSQPPSIQNVDDAVSQF 47


>ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 46.6 bits (109), Expect(2) = 4e-07
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = -3

Query: 120 QFNKILGSLAKTKKHYRTAISLYQQMEFTGIMPDIFTFN 4
           QFNKIL S AK K HY TA+SL  ++E  GI PD+ T N
Sbjct: 61  QFNKILDSFAKMK-HYSTAVSLSHRLELKGIQPDLITLN 98



 Score = 32.3 bits (72), Expect(2) = 4e-07
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -2

Query: 214 HSQPPSTLNVDDAVSSF 164
           HSQPPS  NVDDAVS F
Sbjct: 31  HSQPPSIQNVDDAVSQF 47


>ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 422

 Score = 40.4 bits (93), Expect(2) = 5e-07
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = -3

Query: 120 QFNKILGSLAKTKKHYRTAISLYQQMEFTGIMPDIFTFN 4
           +FNKILGS  K K +Y  AISL +QME  GI P++ T N
Sbjct: 56  KFNKILGSPVKMK-YYPAAISLSKQMEVKGIEPNLVTLN 93



 Score = 38.1 bits (87), Expect(2) = 5e-07
 Identities = 23/32 (71%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -2

Query: 256 PNPIFPLLCFSSLSHSQPPSTLN-VDDAVSSF 164
           PNPIFPL CF    HSQPPS  N VDDAVS F
Sbjct: 16  PNPIFPL-CF----HSQPPSIDNVVDDAVSQF 42


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