BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00025842
         (423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003606559.1| DNA-directed RNA polymerase subunit beta [Me...   211   4e-53
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...   204   5e-51
ref|XP_003606557.1| DNA-directed RNA polymerase subunit beta [Me...   202   2e-50
ref|XP_003606551.1| DNA-directed RNA polymerase [Medicago trunca...   162   3e-38
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   115   3e-24

>ref|XP_003606559.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355507614|gb|AES88756.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1036

 Score =  211 bits (538), Expect = 4e-53
 Identities = 107/143 (74%), Positives = 122/143 (85%), Gaps = 3/143 (2%)
 Frame = +2

Query: 2    RNAGGGIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLRSKAICPSDGDDVILSSSDVCKV 181
            R+A   +VQFCYGDDGMDPAGMEGKNGKPLNF+RLFLRSKAICP+DGDD ILSSSDV KV
Sbjct: 758  RDANCSLVQFCYGDDGMDPAGMEGKNGKPLNFDRLFLRSKAICPADGDDTILSSSDVHKV 817

Query: 182  IHEKLSELGMSKLVEKGVSEDDIMSEVGSSADFINSLQSFVKDNTKLTEAFTVDNS---K 352
            +HEKLSE+GMSKLVEK  S +DI   VG S DF+ SLQSFV +NTKLTE+ T D+S   K
Sbjct: 818  LHEKLSEVGMSKLVEKNASNNDITPAVGFSTDFLKSLQSFVGENTKLTESITEDDSNNLK 877

Query: 353  SLKNFIQRISGMTRKQLEVFLDI 421
            +LKNFI RISG++R+QLEVFLDI
Sbjct: 878  NLKNFISRISGISRRQLEVFLDI 900


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score =  204 bits (520), Expect = 5e-51
 Identities = 106/141 (75%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = +2

Query: 2    RNAGGGIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLRSKAICPSDGDDVILSSSDVCKV 181
            RNAGG IVQFCYGDDGMDPAGMEGKNGKPLNFERLFL+SKAICP+D DD ILSSSDV KV
Sbjct: 894  RNAGGSIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKV 953

Query: 182  IHEKLSELGMSKLVEKGVSEDDIMSEVGSSADFINSLQSFVKDNTKLT-EAFTVDNSKSL 358
            +HEKLSE  MS+L EKGV       EVG SADF+ SLQSF+KDN KLT E FT ++S++L
Sbjct: 954  VHEKLSEFDMSRLAEKGV------FEVGFSADFVESLQSFIKDNAKLTEEGFTDEHSQNL 1007

Query: 359  KNFIQRISGMTRKQLEVFLDI 421
            K F QRISG+TRKQL+VFL+I
Sbjct: 1008 KKFGQRISGITRKQLDVFLNI 1028


>ref|XP_003606557.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355507612|gb|AES88754.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 350

 Score =  202 bits (514), Expect = 2e-50
 Identities = 102/138 (73%), Positives = 117/138 (84%), Gaps = 3/138 (2%)
 Frame = +2

Query: 2   RNAGGGIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLRSKAICPSDGDDVILSSSDVCKV 181
           R+A   +VQFCYGDDGMDPAGMEGKNGKPLNF+RLFLRSKAICP+DGDD ILSSSDV KV
Sbjct: 37  RDANCSLVQFCYGDDGMDPAGMEGKNGKPLNFDRLFLRSKAICPADGDDTILSSSDVHKV 96

Query: 182 IHEKLSELGMSKLVEKGVSEDDIMSEVGSSADFINSLQSFVKDNTKLTEAFTVDNS---K 352
           +HEKLSE+GMSKLVEK  S +DI   VG S DF+ SLQSFV +NTKLTE+ T D+S   K
Sbjct: 97  LHEKLSEVGMSKLVEKNASNNDITPAVGFSTDFLKSLQSFVGENTKLTESITEDDSNNLK 156

Query: 353 SLKNFIQRISGMTRKQLE 406
           +LKNFI RISG++R+QLE
Sbjct: 157 NLKNFISRISGISRRQLE 174


>ref|XP_003606551.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355507606|gb|AES88748.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 550

 Score =  162 bits (409), Expect = 3e-38
 Identities = 83/140 (59%), Positives = 102/140 (72%)
 Frame = +2

Query: 2   RNAGGGIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLRSKAICPSDGDDVILSSSDVCKV 181
           R+  G IVQFCYGDDGMDPA                     ICP+DG+DVILSSSDVCKV
Sbjct: 30  RDTNGSIVQFCYGDDGMDPA---------------------ICPADGNDVILSSSDVCKV 68

Query: 182 IHEKLSELGMSKLVEKGVSEDDIMSEVGSSADFINSLQSFVKDNTKLTEAFTVDNSKSLK 361
           +HEKLSE+GMS LVEK  S+ DI S++G SADF+ SLQSFV+ NT LT++   D+S +LK
Sbjct: 69  LHEKLSEVGMSMLVEKNASDKDITSDIGFSADFLKSLQSFVEKNTTLTKSIGEDDSSNLK 128

Query: 362 NFIQRISGMTRKQLEVFLDI 421
           NF+ +ISG++R+QLEVFLDI
Sbjct: 129 NFLPKISGISRRQLEVFLDI 148


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  115 bits (289), Expect = 3e-24
 Identities = 69/159 (43%), Positives = 87/159 (54%), Gaps = 20/159 (12%)
 Frame = +2

Query: 2    RNAGGGIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLRSKAICPSDGDDVILSSSDVCKV 181
            RNAGG IVQFCYGDDGMDPA MEGK+G PLNFERLFL++KA CPSDG+ +          
Sbjct: 888  RNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKI---------- 937

Query: 182  IHEKLSELGMSKLVEKGVSEDDIMSEVGSSADFINSLQSFVK---------------DNT 316
                LS    S+ VE  +S+DD   E G S  F+ SL+ F+                DN 
Sbjct: 938  ----LSPSEFSETVEDRLSKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNE 993

Query: 317  KLTEAFTV-----DNSKSLKNFIQRISGMTRKQLEVFLD 418
               +   +     DN       +Q I+G+T +QL+VFLD
Sbjct: 994  SAVDKSIISSSDNDNIVIRNKVVQNIAGVTHRQLQVFLD 1032