BLASTX nr result

ID: Glycyrrhiza24_contig00025387 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00025387
         (593 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003617486.1| DNA polymerase [Medicago truncatula] gi|3555...   227   1e-57
ref|XP_003518521.1| PREDICTED: uncharacterized protein LOC100797...   168   6e-40
ref|XP_003599987.1| DNA polymerase [Medicago truncatula] gi|3554...    75   1e-11
ref|XP_003599989.1| DNA polymerase [Medicago truncatula] gi|3554...    58   1e-06

>ref|XP_003617486.1| DNA polymerase [Medicago truncatula] gi|355518821|gb|AET00445.1|
           DNA polymerase [Medicago truncatula]
          Length = 1084

 Score =  227 bits (579), Expect = 1e-57
 Identities = 116/193 (60%), Positives = 139/193 (72%), Gaps = 1/193 (0%)
 Frame = +2

Query: 17  MEASTQTTALRPYCPLCCRVSHPFXXXXXXXXXXXXXXTPHRRKIKAIQIASNGLRNSLV 196
           MEA+TQ+T+LRPYCPLCCR+S PF              TPHRRKIKAIQIASNGLRNS +
Sbjct: 1   MEATTQSTSLRPYCPLCCRLSRPFSLSLSSCSSLVSL-TPHRRKIKAIQIASNGLRNSTM 59

Query: 197 PSN-FRADLCCPKWTSLGLNKYNDMRHKRDFPYKIPVRISFMKFSNAPTGXXXXXXXXXX 373
            SN  RADL C K TSLGLN++++  +K +FPYK PVR++ MKFSNA             
Sbjct: 60  HSNCVRADLLCTKLTSLGLNEHSNTGYKHNFPYKNPVRVTLMKFSNASASMLEEMMVEEE 119

Query: 374 XNSLHSCETQVRMADVAPCNRGVSTTAAERKLSGGDNRGWIVAKDKLAEGKKERNGANKF 553
            NS HS E QVR  DVAPCN  +STTA ERKL+GGDNRGW +AK+KLAEGKKE NG N++
Sbjct: 120 VNSSHSSEMQVRKVDVAPCNPELSTTATERKLAGGDNRGWTLAKNKLAEGKKEMNGTNRY 179

Query: 554 EKKNDSSYASNRF 592
           E+K++ S+ SNRF
Sbjct: 180 ERKSNGSHVSNRF 192


>ref|XP_003518521.1| PREDICTED: uncharacterized protein LOC100797016 [Glycine max]
          Length = 1077

 Score =  168 bits (426), Expect = 6e-40
 Identities = 99/190 (52%), Positives = 115/190 (60%), Gaps = 5/190 (2%)
 Frame = +2

Query: 32  QTTALRPYCPLCCRV-SHPFXXXXXXXXXXXXXXTPHRRKIKAIQIASNGLRNSLVPSNF 208
           + +ALRP+CPLC R  S PF                 RRK+++ QI+ NGLRNS V  NF
Sbjct: 2   EVSALRPHCPLCRRCFSSPFSLPSLLPSQPL-----QRRKMQSFQISYNGLRNSTVLRNF 56

Query: 209 ---RADL-CCPKWTSLGLNKYNDMRHKRDFPYKIPVRISFMKFSNAPTGXXXXXXXXXXX 376
              RAD  CC K TS+GLNKYN  R+KR+F  K PV IS MK SNA TG           
Sbjct: 57  VQSRADFSCCLKGTSVGLNKYNGARYKRNFLCKSPVCISSMKISNASTGTLEEMTEEEEL 116

Query: 377 NSLHSCETQVRMADVAPCNRGVSTTAAERKLSGGDNRGWIVAKDKLAEGKKERNGANKFE 556
           NSL  CE QVR   +A CN   STT   +KLSGGD RGW +AKDKL E KKE NG+NKFE
Sbjct: 117 NSLRPCEMQVRTVGMAACNNEFSTTTLGKKLSGGDYRGWTMAKDKLTENKKEMNGSNKFE 176

Query: 557 KKNDSSYASN 586
           ++N S  ASN
Sbjct: 177 RENGSFSASN 186


>ref|XP_003599987.1| DNA polymerase [Medicago truncatula] gi|355489035|gb|AES70238.1|
           DNA polymerase [Medicago truncatula]
          Length = 1112

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 71/193 (36%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
 Frame = +2

Query: 17  MEASTQTTALRP--YCPLCCRVS----HPFXXXXXXXXXXXXXXTPH--RRKIKAIQIAS 172
           M  S+Q+TA R   YCP C   S     PF              +    RRK K+IQIAS
Sbjct: 1   MRVSSQSTAFRSTYYCPSCFSFSSSSSRPFRSSLSSLGFFANYGSSQHSRRKSKSIQIAS 60

Query: 173 NGLRNSLVPSN---FRADLCCPKWTSLGLNKYNDMRHKRDFPYKIPVRISFMKFSNAPTG 343
           N LR+  +  +   FR    CPK  S GL K NDM + R+     PV IS MKFS A   
Sbjct: 61  NFLRHRNLSGSSLQFREGSYCPKRISFGLKKCNDMEYHRN----SPVHISVMKFSTASFS 116

Query: 344 ---XXXXXXXXXXXNSLHSCETQVR-MADVAPCNRGVSTTAAERKLSGGDNRGWIVAKDK 511
                         +SL S + QVR M     C+  +S T   RKLS GD  GW  A  K
Sbjct: 117 TLKVTNQTRREEELSSLSSYDRQVRMMTHFGSCSYRLSKT-PRRKLS-GDRTGWAEAGHK 174

Query: 512 LAEGKKERNGANK 550
           L + K E +  +K
Sbjct: 175 LTQIKMEMHDLDK 187


>ref|XP_003599989.1| DNA polymerase [Medicago truncatula] gi|355489037|gb|AES70240.1|
           DNA polymerase [Medicago truncatula]
          Length = 1098

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 62/193 (32%), Positives = 78/193 (40%), Gaps = 15/193 (7%)
 Frame = +2

Query: 17  MEASTQTTALRP--YCPLCCRVSHPFXXXXXXXXXXXXXXTPHRRKIKAIQIASN----- 175
           M  S+Q+TA R   YCP C   S                  P R  + ++   +N     
Sbjct: 1   MRVSSQSTAFRSTFYCPSCFSFSSS------------SSSRPFRSSLSSLGFFANYGSSQ 48

Query: 176 ----GLRNSLVPSNFRADLCCPKWTSLGLNKYNDMRHKRDFPYKIPVRISFMKFSNAPTG 343
                L  S +   FR    CPK  S GL K NDM + R+     PV IS MKFS A   
Sbjct: 49  HRHRNLSGSFL--QFREGSYCPKRISFGLKKCNDMEYHRN----SPVHISVMKFSTASFS 102

Query: 344 ---XXXXXXXXXXXNSLHSCETQVR-MADVAPCNRGVSTTAAERKLSGGDNRGWIVAKDK 511
                         +SL S + QVR M     C+  +S T   RKLS GD  GW  A  K
Sbjct: 103 TLKVTNQTRREEELSSLSSYDRQVRMMTHFGSCSYRLSKT-PRRKLS-GDRTGWAEAGHK 160

Query: 512 LAEGKKERNGANK 550
           L + K E +  +K
Sbjct: 161 LTQIKMEMHDLDK 173


Top