BLASTX nr result

ID: Glycyrrhiza24_contig00025239 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00025239
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003620296.1| Fiber expressed protein [Medicago truncatula...    85   5e-15
gb|AFK43845.1| unknown [Medicago truncatula]                           84   9e-15
ref|XP_003620292.1| Cotton fiber expressed protein [Medicago tru...    84   9e-15
ref|XP_002329689.1| predicted protein [Populus trichocarpa] gi|2...    74   2e-11
ref|XP_002528226.1| hypothetical protein RCOM_0460020 [Ricinus c...    70   2e-10

>ref|XP_003620296.1| Fiber expressed protein [Medicago truncatula]
           gi|357500037|ref|XP_003620307.1| Fiber expressed protein
           [Medicago truncatula] gi|355495311|gb|AES76514.1| Fiber
           expressed protein [Medicago truncatula]
           gi|355495322|gb|AES76525.1| Fiber expressed protein
           [Medicago truncatula]
          Length = 331

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 40/51 (78%), Positives = 45/51 (88%)
 Frame = +1

Query: 4   VSKLVLMSMGIISILVLLKVAIIPYTFDLVLSTLPRLWISARKWLTLPFLY 156
           V+KLVLMS+GIIS L+L KVAIIPYTFDLVLSTLP+LW S R W T+PFLY
Sbjct: 21  VAKLVLMSIGIISTLILFKVAIIPYTFDLVLSTLPQLWFSIRTWFTIPFLY 71


>gb|AFK43845.1| unknown [Medicago truncatula]
          Length = 195

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 40/51 (78%), Positives = 45/51 (88%)
 Frame = +1

Query: 4   VSKLVLMSMGIISILVLLKVAIIPYTFDLVLSTLPRLWISARKWLTLPFLY 156
           V+KLVL+S+GIIS L+L KVAIIPYTFDLVLSTLP+LW S R W TLPFLY
Sbjct: 21  VAKLVLISIGIISTLILFKVAIIPYTFDLVLSTLPQLWFSIRTWFTLPFLY 71


>ref|XP_003620292.1| Cotton fiber expressed protein [Medicago truncatula]
           gi|357500045|ref|XP_003620311.1| Cotton fiber expressed
           protein [Medicago truncatula]
           gi|355495307|gb|AES76510.1| Cotton fiber expressed
           protein [Medicago truncatula]
           gi|355495326|gb|AES76529.1| Cotton fiber expressed
           protein [Medicago truncatula]
          Length = 316

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 40/51 (78%), Positives = 45/51 (88%)
 Frame = +1

Query: 4   VSKLVLMSMGIISILVLLKVAIIPYTFDLVLSTLPRLWISARKWLTLPFLY 156
           V+KLVL+S+GIIS L+L KVAIIPYTFDLVLSTLP+LW S R W TLPFLY
Sbjct: 21  VAKLVLISIGIISTLILFKVAIIPYTFDLVLSTLPQLWFSIRTWFTLPFLY 71


>ref|XP_002329689.1| predicted protein [Populus trichocarpa] gi|222870597|gb|EEF07728.1|
           predicted protein [Populus trichocarpa]
          Length = 326

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 33/52 (63%), Positives = 42/52 (80%)
 Frame = +1

Query: 1   WVSKLVLMSMGIISILVLLKVAIIPYTFDLVLSTLPRLWISARKWLTLPFLY 156
           W  KLVL+S+GIIS  +L KVAIIP TF+L+LSTLP +WIS R WL+ P++Y
Sbjct: 20  WAVKLVLLSVGIISTFILFKVAIIPCTFNLILSTLPSVWISLRGWLSPPYIY 71


>ref|XP_002528226.1| hypothetical protein RCOM_0460020 [Ricinus communis]
           gi|223532362|gb|EEF34159.1| hypothetical protein
           RCOM_0460020 [Ricinus communis]
          Length = 328

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 28/52 (53%), Positives = 41/52 (78%)
 Frame = +1

Query: 1   WVSKLVLMSMGIISILVLLKVAIIPYTFDLVLSTLPRLWISARKWLTLPFLY 156
           W +KLVL+S GI++ ++  KVA++P+ FDL+LSTLP LWIS   WL+ P++Y
Sbjct: 20  WGAKLVLLSAGIMAAIIFFKVAMVPFAFDLILSTLPSLWISLHSWLSPPYIY 71


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