BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00024920
         (498 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   235   2e-60
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   235   3e-60
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   218   5e-55
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...   214   6e-54
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ...   213   1e-53

>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  235 bits (600), Expect = 2e-60
 Identities = 126/175 (72%), Positives = 136/175 (77%), Gaps = 9/175 (5%)
 Frame = +1

Query: 1   VKQMLQEKKSTSSRPLNIAAEKDRLRRELEIAQSKKDEAQVEKIKTRLQELEASRQAREK 180
           VKQMLQEKKS S+RPLN+AAEKDRLRRELEIAQSK DEA+VE+IKTRLQELEASRQA++K
Sbjct: 411 VKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQAKQK 470

Query: 181 DAKALKLAEMNRKNRFENLKNASELKPINTVLKAGEAGYDPFSRRWTRPRNYYDSEPGEG 360
           DAKALKLAEMNRKNRFEN KNASELKP+N  LKAGEAGYDPFSRRWTR RNYY ++PGE 
Sbjct: 471 DAKALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEK 530

Query: 361 AAAGNN---------STMETAVAAEAGNGMVXXXXXXXXXXXXGKLVDTSAPVDQ 498
           AAAGNN          +  T     A  GMV            GKLVDTSAPVDQ
Sbjct: 531 AAAGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQ 585


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  235 bits (599), Expect = 3e-60
 Identities = 126/175 (72%), Positives = 137/175 (78%), Gaps = 9/175 (5%)
 Frame = +1

Query: 1   VKQMLQEKKSTSSRPLNIAAEKDRLRRELEIAQSKKDEAQVEKIKTRLQELEASRQAREK 180
           VKQMLQEKKS S+RPLN+AAEKDRLRRELEIAQSK DEA+VE+IKTRL ELEASRQA++K
Sbjct: 411 VKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQK 470

Query: 181 DAKALKLAEMNRKNRFENLKNASELKPINTVLKAGEAGYDPFSRRWTRPRNYYDSEPGEG 360
           DAKALKLAEMNRKNRFEN KNASE+KP+NT LKAGEAGYDPFSRRWTR RNYY ++PGE 
Sbjct: 471 DAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEK 530

Query: 361 AAAGNNS---------TMETAVAAEAGNGMVXXXXXXXXXXXXGKLVDTSAPVDQ 498
           AAAGNNS         +  T     A  GMV            GKLVDTSAPVDQ
Sbjct: 531 AAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQ 585


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  218 bits (554), Expect = 5e-55
 Identities = 116/177 (65%), Positives = 134/177 (75%), Gaps = 11/177 (6%)
 Frame = +1

Query: 1   VKQMLQEKKSTSSRPLNIAAEKDRLRRELEIAQSKKDEAQVEKIKTRLQELEASRQAREK 180
           VKQMLQEKKS SSRPLN+AAEKDRLRRELE+AQSK+D+A+VE+I+ R+QELEASRQ + K
Sbjct: 413 VKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGK 472

Query: 181 DAKALKLAEMNRKNRFENLKNASELKPINTVLKAGEAGYDPFSRRWTRPRNYYDSEP--G 354
           DAKA++LAEMNRKNR EN +NASELKP+NT LKAGEAGYDPFSRRWTR RNYY S+P  G
Sbjct: 473 DAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGG 532

Query: 355 EGAAAGNN---------STMETAVAAEAGNGMVXXXXXXXXXXXXGKLVDTSAPVDQ 498
           + AAA NN         +  E+A    A  GM             GKLVDT+APVDQ
Sbjct: 533 DAAAATNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQ 589


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
           gi|222859693|gb|EEE97240.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 664

 Score =  214 bits (545), Expect = 6e-54
 Identities = 117/178 (65%), Positives = 132/178 (74%), Gaps = 12/178 (6%)
 Frame = +1

Query: 1   VKQMLQEKKSTSSRPLNIAAEKDRLRRELEIAQSKKDEAQVEKIKTRLQELEASRQAREK 180
           VKQMLQEKKS SSRPLN+AAEKDRLRRELEIAQS+ DEA+VE+I+ R+ ELEASRQA+ K
Sbjct: 416 VKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVK 475

Query: 181 DAKALKLAEMNRKNRFENLKNASELKPINTVLKAGEAGYDPFSRRWTRPRNYYDSEPGEG 360
           DAKAL+LAEMNRKNR EN +NASELKPINT LKAGEAGYDPFSRRWTR RNYY S P  G
Sbjct: 476 DAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGG 535

Query: 361 ---AAAGNNSTMETAVAAEAG---------NGMVXXXXXXXXXXXXGKLVDTSAPVDQ 498
               AA N+   +TA  A++          +G+             GKLVDTSAPVDQ
Sbjct: 536 DDAVAASNSEANDTAALADSDHVVAGAISESGVAATAAALDAAADAGKLVDTSAPVDQ 593


>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
           truncatula] gi|355500443|gb|AES81646.1| RNA
           polymerase-associated protein RTF1-like protein
           [Medicago truncatula]
          Length = 624

 Score =  213 bits (542), Expect = 1e-53
 Identities = 111/169 (65%), Positives = 130/169 (76%), Gaps = 3/169 (1%)
 Frame = +1

Query: 1   VKQMLQEKKSTSSRPLNIAAEKDRLRRELEIAQSKKDEAQVEKIKTRLQELEASRQAREK 180
           VKQML+EKKS S RPLN+AAEKDRL+RELEIA+SK D A VEKI+T+LQELE SR++REK
Sbjct: 385 VKQMLEEKKSISRRPLNVAAEKDRLKRELEIAESKNDAAGVEKIQTKLQELEESRKSREK 444

Query: 181 DAKALKLAEMNRKNRFENLKNASELKPINTVLKAGEAGYDPFSRRWTRPRNYYDSEPGEG 360
           DAKAL+L+EMNRKNR EN KNAS+LKP+N  LKAGEAGYDPFSRRWTR RNYY+S+P E 
Sbjct: 445 DAKALRLSEMNRKNRVENFKNASDLKPVNKALKAGEAGYDPFSRRWTRSRNYYNSKPAEE 504

Query: 361 AAAGNNST---METAVAAEAGNGMVXXXXXXXXXXXXGKLVDTSAPVDQ 498
           A AGNN++   +    +   G GM             GKLVDT APVD+
Sbjct: 505 ATAGNNTSGGAVGDGGSNGIGAGMAATTEALEAAAGAGKLVDTRAPVDE 553