BLASTX nr result

ID: Glycyrrhiza24_contig00024916 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00024916
         (241 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACJ85144.1| unknown [Medicago truncatula]                          111   7e-23
ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatul...   111   7e-23
ref|XP_003556366.1| PREDICTED: DNA repair protein XRCC4-like [Gl...   100   1e-19
ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus ...    99   3e-19
ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis v...    99   5e-19

>gb|ACJ85144.1| unknown [Medicago truncatula]
          Length = 135

 Score =  111 bits (277), Expect = 7e-23
 Identities = 49/72 (68%), Positives = 62/72 (86%)
 Frame = +3

Query: 24  MEETKRHTCMKLQIRNCTTSGEAIFVKGTWFDTHFDLAITDGHTAWYCHVSEEEVKERAA 203
           MEE KRHTC+KLQ+    T  E+IFVKGTWF+THF+L+ITDG T+W+C+ SE+EVK+RAA
Sbjct: 1   MEEKKRHTCLKLQL----TEEESIFVKGTWFNTHFNLSITDGSTSWHCNASEDEVKQRAA 56

Query: 204 QWDQPVSEYLQL 239
           QWDQPV EY++L
Sbjct: 57  QWDQPVEEYVEL 68


>ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatula]
           gi|355479842|gb|AES61045.1| DNA repair protein XRCC4
           [Medicago truncatula]
          Length = 256

 Score =  111 bits (277), Expect = 7e-23
 Identities = 49/72 (68%), Positives = 62/72 (86%)
 Frame = +3

Query: 24  MEETKRHTCMKLQIRNCTTSGEAIFVKGTWFDTHFDLAITDGHTAWYCHVSEEEVKERAA 203
           MEE KRHTC+KLQ+    T  E+IFVKGTWF+THF+L+ITDG T+W+C+ SE+EVK+RAA
Sbjct: 1   MEEKKRHTCLKLQL----TEEESIFVKGTWFNTHFNLSITDGSTSWHCNASEDEVKQRAA 56

Query: 204 QWDQPVSEYLQL 239
           QWDQPV EY++L
Sbjct: 57  QWDQPVEEYVEL 68


>ref|XP_003556366.1| PREDICTED: DNA repair protein XRCC4-like [Glycine max]
          Length = 256

 Score =  100 bits (249), Expect = 1e-19
 Identities = 49/73 (67%), Positives = 54/73 (73%)
 Frame = +3

Query: 21  MMEETKRHTCMKLQIRNCTTSGEAIFVKGTWFDTHFDLAITDGHTAWYCHVSEEEVKERA 200
           M EET+R +C KL I      GE IFVK TWF THF LA+TDG TAW+CH S EEVK+RA
Sbjct: 1   MEEETERFSCSKLLI----PKGEPIFVKATWFPTHFHLAVTDGITAWHCHPSAEEVKQRA 56

Query: 201 AQWDQPVSEYLQL 239
           AQWD PVSEYL L
Sbjct: 57  AQWDLPVSEYLNL 69


>ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
           gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4,
           putative [Ricinus communis]
          Length = 265

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 46/70 (65%), Positives = 54/70 (77%)
 Frame = +3

Query: 30  ETKRHTCMKLQIRNCTTSGEAIFVKGTWFDTHFDLAITDGHTAWYCHVSEEEVKERAAQW 209
           ET RHTC+KL+I       E IFVKGTWFD+HF L+ITDG  AW C+ +E +VKERAAQW
Sbjct: 11  ETARHTCLKLEIT------EPIFVKGTWFDSHFHLSITDGLNAWVCNATEGQVKERAAQW 64

Query: 210 DQPVSEYLQL 239
           DQPVSEY+ L
Sbjct: 65  DQPVSEYINL 74


>ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
          Length = 259

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 45/72 (62%), Positives = 55/72 (76%)
 Frame = +3

Query: 24  MEETKRHTCMKLQIRNCTTSGEAIFVKGTWFDTHFDLAITDGHTAWYCHVSEEEVKERAA 203
           ME T RH+C+KLQI N     E IF+K TWF +HF L+ITDG  AW C+ SE+EV+ERAA
Sbjct: 1   MEPTPRHSCLKLQIPN---QSEPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAA 57

Query: 204 QWDQPVSEYLQL 239
           QWDQPVS+Y+ L
Sbjct: 58  QWDQPVSDYIAL 69


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