BLASTX nr result

ID: Glycyrrhiza24_contig00024596 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00024596
         (801 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003603256.1| Glutamate receptor 2.8 [Medicago truncatula]...   143   2e-54
ref|XP_003603255.1| Glutamate receptor 2.8 [Medicago truncatula]...   132   9e-54
gb|ABW74564.1| glutamate receptor 3 [Boechera divaricarpa]             81   1e-24
ref|XP_002336577.1| glutamate-gated kainate-type ion channel rec...    81   1e-24
gb|ABW81071.1| unknown [Cleome spinosa]                                73   2e-24

>ref|XP_003603256.1| Glutamate receptor 2.8 [Medicago truncatula]
            gi|355492304|gb|AES73507.1| Glutamate receptor 2.8
            [Medicago truncatula]
          Length = 990

 Score =  143 bits (361), Expect(2) = 2e-54
 Identities = 77/177 (43%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
 Frame = -3

Query: 637  WFNETSCLESNTEVSSNSSLGLESFWXXXXXXXXXXXXXXXXXAMTFLYQHRHVWLHYDP 458
            WF E+ CL+SNTE+SSN+SLGLESFW                  +TFL+QH+H+WL+ +P
Sbjct: 829  WFKESRCLDSNTEISSNNSLGLESFWGLFLIAGIASLLALLIFVVTFLHQHKHIWLNNNP 888

Query: 457  STSIWRRLGILLRIFDQRDMESHTFXXXXXXXXXXXXSPHH-GLGAVEAXXXXXXXXXXX 281
            S SIWRR+ ++ R+FDQRD+ SHTF              HH  LGAVE            
Sbjct: 889  SNSIWRRIEVVFRMFDQRDLSSHTFKKTENINESSNNPYHHDDLGAVEVSPGTPYPPSPF 948

Query: 280  XXTESNFSFYGDSSPDHGSDAKPNGYAADCQDREMDAVQIINP*IAPVNKCKFNSQA 110
              TESN SFYGD S                Q+ +MD +QI NP ++PVN C+ NSQA
Sbjct: 949  SQTESNVSFYGDFS----------------QNIDMDVMQITNPEVSPVNNCEINSQA 989



 Score = 95.5 bits (236), Expect(2) = 2e-54
 Identities = 47/55 (85%), Positives = 49/55 (89%), Gaps = 2/55 (3%)
 Frame = -2

Query: 800 FLGTYSCS--KYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAIE 642
           FLG YSCS  KY M+EPRFKTGGFGYAFPKGSPLVADISRAIL+VTQG KMR IE
Sbjct: 772 FLGIYSCSSSKYAMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGGKMRTIE 826


>ref|XP_003603255.1| Glutamate receptor 2.8 [Medicago truncatula]
            gi|355492303|gb|AES73506.1| Glutamate receptor 2.8
            [Medicago truncatula]
          Length = 1057

 Score =  132 bits (332), Expect(2) = 9e-54
 Identities = 72/173 (41%), Positives = 89/173 (51%)
 Frame = -3

Query: 637  WFNETSCLESNTEVSSNSSLGLESFWXXXXXXXXXXXXXXXXXAMTFLYQHRHVWLHYDP 458
            W  +TSCL+SNTE+SSN+SLGLESFW                  +TFLYQH+H+WL   P
Sbjct: 900  WLKKTSCLDSNTEISSNNSLGLESFWGLFLIAGIASLLALLIFVITFLYQHKHIWLPNSP 959

Query: 457  STSIWRRLGILLRIFDQRDMESHTFXXXXXXXXXXXXSPHHGLGAVEAXXXXXXXXXXXX 278
            S SIWRR+ +L+ IFDQRD+ SHTF              H   GAVEA            
Sbjct: 960  SNSIWRRIRVLVMIFDQRDLNSHTFKKSGNKHESSNSPHHDDFGAVEASPGTHCPPSPSS 1019

Query: 277  XTESNFSFYGDSSPDHGSDAKPNGYAADCQDREMDAVQIINP*IAPVNKCKFN 119
             TESN S  GD SP                + E+D VQI N  ++PVN C+ +
Sbjct: 1020 QTESNVSLNGDFSP----------------NTELDVVQITNQEVSPVNNCEID 1056



 Score =  104 bits (260), Expect(2) = 9e-54
 Identities = 48/53 (90%), Positives = 52/53 (98%)
 Frame = -2

Query: 800  FLGTYSCSKYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAIE 642
            FLGTYSCSKYVM+EPRFKTGGFGYAFPKGSPLVADISRAIL+VTQGD+M+ IE
Sbjct: 845  FLGTYSCSKYVMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGDRMKTIE 897


>gb|ABW74564.1| glutamate receptor 3 [Boechera divaricarpa]
          Length = 954

 Score = 80.9 bits (198), Expect(2) = 1e-24
 Identities = 36/47 (76%), Positives = 41/47 (87%)
 Frame = -2

Query: 782 CSKYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAIE 642
           CSKYVM+EP FKT GFG+AFPK SPL  D+SRAIL+VTQGD+MR IE
Sbjct: 747 CSKYVMVEPTFKTAGFGFAFPKNSPLTGDVSRAILNVTQGDEMRRIE 793



 Score = 58.5 bits (140), Expect(2) = 1e-24
 Identities = 32/82 (39%), Positives = 41/82 (50%)
 Frame = -3

Query: 628  ETSCLESNTEVSSNSSLGLESFWXXXXXXXXXXXXXXXXXAMTFLYQHRHVWLHYDPSTS 449
            +  C +  T +SSN  L L SFW                    FLY+HRH  L YD   S
Sbjct: 800  QNDCPDPKTALSSNR-LSLRSFWGLFLIAGIASFLALLVFVAIFLYEHRHT-LCYDSEYS 857

Query: 448  IWRRLGILLRIFDQRDMESHTF 383
            +WR L  L R FD++D++SHTF
Sbjct: 858  MWRNLMFLFRAFDEKDIKSHTF 879


>ref|XP_002336577.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222836230|gb|EEE74651.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 387

 Score = 80.9 bits (198), Expect(2) = 1e-24
 Identities = 35/47 (74%), Positives = 43/47 (91%)
 Frame = -2

Query: 782 CSKYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAIE 642
           CS+Y MI+P+FKTGGFG+ FPKGSPLV DISRAIL+VT+GD+M+ IE
Sbjct: 192 CSRYTMIDPKFKTGGFGFVFPKGSPLVPDISRAILNVTEGDEMKQIE 238



 Score = 58.5 bits (140), Expect(2) = 1e-24
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = -3

Query: 637 WFNETS-CLESNTEVSSNSSLGLESFWXXXXXXXXXXXXXXXXXAMTFLYQHRHVWLHYD 461
           WF + S C ES++ +SSNS L L+SFW                  + F+Y+ R+V   YD
Sbjct: 241 WFGKKSTCPESSSSISSNS-LSLKSFWGLFLLAGLAALLALIIFIVMFVYRERNVLRSYD 299

Query: 460 PSTSIWRRLGILLRIFDQRDMESHTF 383
            + SIW R+    RIF QRD  S TF
Sbjct: 300 STASIWSRIENFFRIFIQRDSTSSTF 325


>gb|ABW81071.1| unknown [Cleome spinosa]
          Length = 986

 Score = 72.8 bits (177), Expect(2) = 2e-24
 Identities = 30/47 (63%), Positives = 38/47 (80%)
 Frame = -2

Query: 782 CSKYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAIE 642
           C+KY M+EP FKT GFG+ FPKGSPL  D+S+AIL V +G++MR IE
Sbjct: 758 CTKYTMVEPSFKTAGFGFVFPKGSPLTGDVSKAILDVNEGEEMRQIE 804



 Score = 66.2 bits (160), Expect(2) = 2e-24
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
 Frame = -3

Query: 640  EWFN-ETSCLESNTEVSSNSSLGLESFWXXXXXXXXXXXXXXXXXAMTFLYQHRHVWLHY 464
            +WFN + +C + NT +SSNS L L SFW                    FL++ RH  +  
Sbjct: 806  KWFNRQNNCSDPNTALSSNS-LSLSSFWGLFLIVGVASVLALLVFLAMFLFEQRHTLIQS 864

Query: 463  --DPSTSIWRRLGILLRIFDQRDMESHTF 383
              +P  S+WR+  +L+RIFDQ+DM SHTF
Sbjct: 865  NDEPEHSMWRKWAVLVRIFDQKDMNSHTF 893


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