BLASTX nr result
ID: Glycyrrhiza24_contig00024396
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00024396
(474 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEK26371.1| chloroplast photosystem II subunit [Sedum alfredii] 174 9e-42
ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast p... 172 2e-41
gb|ABC59516.1| chloroplast photosystem II 22 kDa component [Nico... 170 1e-40
gb|AFK43146.1| unknown [Lotus japonicus] 168 5e-40
ref|XP_004150442.1| PREDICTED: photosystem II 22 kDa protein, ch... 167 8e-40
>gb|AEK26371.1| chloroplast photosystem II subunit [Sedum alfredii]
Length = 273
Score = 174 bits (440), Expect = 9e-42
Identities = 86/108 (79%), Positives = 91/108 (84%)
Frame = +1
Query: 1 RGKFVDDPPTGLDKAVIPPGKGFRAALGLTEGGPLFGFTKANELFVGRLAQLGFAFSLIG 180
RG+FVDDPPTGL+KAVIPPGKG R+A GL+EGGPLFGFTK+NELFVGRLAQLGFAFSLIG
Sbjct: 161 RGRFVDDPPTGLEKAVIPPGKGLRSAFGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIG 220
Query: 181 EIITGKGALAQLNIETGVPINEIEPXXXXXXXXXXXXXXNPGNGKFVT 324
EIITGKGALAQLNIETGVPINEIEP NPG GKFVT
Sbjct: 221 EIITGKGALAQLNIETGVPINEIEPLVLFNVIFFFFAALNPGTGKFVT 268
Score = 79.0 bits (193), Expect = 4e-13
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +1
Query: 88 TEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 255
T GG GFTK NELFVGR+A +GFA S++GE +TGKG LAQLN+ETG+PI E EP
Sbjct: 88 TSGG--IGFTKQNELFVGRVAMIGFAASILGEAVTGKGILAQLNLETGIPIYEAEP 141
>ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast precursor, putative
[Ricinus communis] gi|223546847|gb|EEF48344.1|
Photosystem II 22 kDa protein, chloroplast precursor,
putative [Ricinus communis]
Length = 275
Score = 172 bits (437), Expect = 2e-41
Identities = 85/108 (78%), Positives = 90/108 (83%)
Frame = +1
Query: 1 RGKFVDDPPTGLDKAVIPPGKGFRAALGLTEGGPLFGFTKANELFVGRLAQLGFAFSLIG 180
RGKFVDDPPTG++ AVIPPGKGFRAALGL EGGPLFGFTK+NELFVGRLAQLG AFSLIG
Sbjct: 163 RGKFVDDPPTGIEGAVIPPGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIG 222
Query: 181 EIITGKGALAQLNIETGVPINEIEPXXXXXXXXXXXXXXNPGNGKFVT 324
EIITGKGALAQLNIETG+P+NEIEP NPG GKFVT
Sbjct: 223 EIITGKGALAQLNIETGIPVNEIEPLVLFNVIFFFFAALNPGTGKFVT 270
Score = 81.3 bits (199), Expect = 8e-14
Identities = 43/72 (59%), Positives = 51/72 (70%)
Frame = +1
Query: 40 KAVIPPGKGFRAALGLTEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLN 219
K V+ P + + T GG GFTK NELFVGR+A LGFA SL+GE +TGKG LAQLN
Sbjct: 74 KTVVKPKQKVEDGVFGTSGG--IGFTKQNELFVGRVAMLGFAASLLGEGLTGKGILAQLN 131
Query: 220 IETGVPINEIEP 255
+ETG+PI E EP
Sbjct: 132 LETGIPIYEAEP 143
>gb|ABC59516.1| chloroplast photosystem II 22 kDa component [Nicotiana benthamiana]
gi|186926676|gb|ACC95540.1| chloroplast photosystem II
22 kDa component [Nicotiana benthamiana]
Length = 277
Score = 170 bits (431), Expect = 1e-40
Identities = 86/110 (78%), Positives = 91/110 (82%), Gaps = 2/110 (1%)
Frame = +1
Query: 1 RGKFVDDP--PTGLDKAVIPPGKGFRAALGLTEGGPLFGFTKANELFVGRLAQLGFAFSL 174
RGKF+DDP PTGLDKAVIPPGKGF++ALGL+EGGPLFGFTKANELFVGRLAQLG AFS+
Sbjct: 163 RGKFIDDPTPPTGLDKAVIPPGKGFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSI 222
Query: 175 IGEIITGKGALAQLNIETGVPINEIEPXXXXXXXXXXXXXXNPGNGKFVT 324
IGEIITGKGALAQLN ETGVPINEIEP NPG GKFVT
Sbjct: 223 IGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVT 272
Score = 80.9 bits (198), Expect = 1e-13
Identities = 44/73 (60%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +1
Query: 40 KAVIP-PGKGFRAALGLTEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQL 216
K V+P P + + T GG GFTK NELFVGR+A +GFA SL+GE ITGKG LAQL
Sbjct: 73 KKVVPKPKEKVEDGIFGTSGG--IGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQL 130
Query: 217 NIETGVPINEIEP 255
N+ETG+PI E EP
Sbjct: 131 NLETGIPIYEAEP 143
>gb|AFK43146.1| unknown [Lotus japonicus]
Length = 273
Score = 168 bits (425), Expect = 5e-40
Identities = 86/109 (78%), Positives = 90/109 (82%), Gaps = 1/109 (0%)
Frame = +1
Query: 1 RGKFVDDP-PTGLDKAVIPPGKGFRAALGLTEGGPLFGFTKANELFVGRLAQLGFAFSLI 177
RGKFVDD PTGLDKAVIPPGKG R ALGL+EGGPLFGFTK+NELFVGRLAQLGFAFSLI
Sbjct: 160 RGKFVDDESPTGLDKAVIPPGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLI 219
Query: 178 GEIITGKGALAQLNIETGVPINEIEPXXXXXXXXXXXXXXNPGNGKFVT 324
GEIITGKGALAQLNIETG+PINEIEP NPG GKFV+
Sbjct: 220 GEIITGKGALAQLNIETGIPINEIEPLVLFNVAFFFIAALNPGTGKFVS 268
Score = 79.3 bits (194), Expect = 3e-13
Identities = 39/56 (69%), Positives = 45/56 (80%)
Frame = +1
Query: 88 TEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 255
T GG GFTK NELFVGR+A +GFA SL+GE +TGKG LAQLN+ETG+PI E EP
Sbjct: 87 TSGG--IGFTKQNELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEP 140
>ref|XP_004150442.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like
[Cucumis sativus] gi|449529497|ref|XP_004171736.1|
PREDICTED: photosystem II 22 kDa protein,
chloroplastic-like [Cucumis sativus]
Length = 272
Score = 167 bits (423), Expect = 8e-40
Identities = 86/110 (78%), Positives = 90/110 (81%), Gaps = 2/110 (1%)
Frame = +1
Query: 1 RGKFVDDPP--TGLDKAVIPPGKGFRAALGLTEGGPLFGFTKANELFVGRLAQLGFAFSL 174
RGKF+DDP TGL++AVIPPGK FR+ALGL EGGPLFGFTKANELFVGRLAQLGFAFSL
Sbjct: 157 RGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSL 216
Query: 175 IGEIITGKGALAQLNIETGVPINEIEPXXXXXXXXXXXXXXNPGNGKFVT 324
IGEIITGKGALAQLNIETGVPINEIEP NPG GKFVT
Sbjct: 217 IGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVT 266
Score = 79.3 bits (194), Expect = 3e-13
Identities = 39/56 (69%), Positives = 45/56 (80%)
Frame = +1
Query: 88 TEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 255
T GG GFTK NELFVGR+A +GFA S++GE ITGKG LAQLN+ETG+PI E EP
Sbjct: 84 TSGG--IGFTKQNELFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEP 137