BLASTX nr result

ID: Glycyrrhiza24_contig00024115 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00024115
         (854 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003539202.1| PREDICTED: uncharacterized protein LOC100813...   336   5e-90
ref|XP_003540760.1| PREDICTED: uncharacterized protein LOC100792...   333   2e-89
ref|XP_003606359.1| Chromatin remodeling complex subunit [Medica...   301   1e-79
ref|XP_002529415.1| mom(plant), putative [Ricinus communis] gi|2...   162   1e-37
ref|XP_002330022.1| chromatin remodeling complex subunit [Populu...   150   4e-34

>ref|XP_003539202.1| PREDICTED: uncharacterized protein LOC100813071 [Glycine max]
          Length = 2002

 Score =  336 bits (861), Expect = 5e-90
 Identities = 183/283 (64%), Positives = 201/283 (71%), Gaps = 2/283 (0%)
 Frame = -1

Query: 845  NLTMDVGPSRLCGNIVETXXXXXXXXXXXXXS--DVQRDQRKLINNVDQPSSKSNDEKSS 672
            NL  D  PSR+CGN+VET             S  DV++  RK  NNVDQPSSKSN E  S
Sbjct: 367  NLIEDAHPSRICGNVVETSGSCSKRIRRISLSESDVKKGGRKTANNVDQPSSKSNGENLS 426

Query: 671  ARNKEGKSGDSVERPQGNNIETEKIRKQQSSLHLSLKPKIAKLCEILLLPDNVKSMVENC 492
             RNKE       E PQGN +ETEKIRKQQ SLHL LKP+IA LCEIL LP+NVKSMVENC
Sbjct: 427  TRNKEDP-----EIPQGNTVETEKIRKQQRSLHLLLKPEIANLCEILHLPENVKSMVENC 481

Query: 491  LEYTMNNYQICTEPASILQAFQLSLCWIAAALLKHKLDFEASLMLAKQHLNFDCKREVVD 312
            LEYTMNNYQICTEP SILQAFQLSLCW AAALL HKLDFE SLMLAKQ+LNFDCK+EVVD
Sbjct: 482  LEYTMNNYQICTEPVSILQAFQLSLCWTAAALLNHKLDFEESLMLAKQNLNFDCKKEVVD 541

Query: 311  EINSRLWDLKDNFLLLTGNSKVIGSPKASKSSNRVYSNPEVTPEIELTKRDISKNIKETQ 132
            EINSRLWDLK+ FL LTGNS V   PKAS+SSN VYS  E TPE+EL K D SKNIK  Q
Sbjct: 542  EINSRLWDLKEFFLKLTGNSNVASYPKASESSNGVYSFIEETPEVELVKNDNSKNIKNVQ 601

Query: 131  EHQNQWGXXXXXXXXXXXXXXKDIGTERADFLRRYRIEWAAMR 3
            + ++QW               KDI  E  +F RRYRI  AA++
Sbjct: 602  KSKSQWNKLLLTQQEEKQKLKKDIENENGEFWRRYRIHRAAIQ 644


>ref|XP_003540760.1| PREDICTED: uncharacterized protein LOC100792516 [Glycine max]
          Length = 2010

 Score =  333 bits (855), Expect = 2e-89
 Identities = 181/286 (63%), Positives = 203/286 (70%), Gaps = 2/286 (0%)
 Frame = -1

Query: 854  DNCNLTMDVGPSRLCGNIVETXXXXXXXXXXXXXS--DVQRDQRKLINNVDQPSSKSNDE 681
            DN NL  D  PSR+CGN+VET             S  DV+RD RK  NNVDQPSSKS  +
Sbjct: 383  DNSNLIEDAHPSRICGNVVETSGSRSKRIRHISLSESDVKRDGRKTANNVDQPSSKSYGD 442

Query: 680  KSSARNKEGKSGDSVERPQGNNIETEKIRKQQSSLHLSLKPKIAKLCEILLLPDNVKSMV 501
              S RNK     D  +RP G  +ETEKIRKQQ SLHL LKP+IA LCEIL LPDNVKSMV
Sbjct: 443  NLSTRNK-----DDSKRPLGVTVETEKIRKQQRSLHLLLKPEIANLCEILRLPDNVKSMV 497

Query: 500  ENCLEYTMNNYQICTEPASILQAFQLSLCWIAAALLKHKLDFEASLMLAKQHLNFDCKRE 321
            ENCLEYTMNNYQICTEP SILQAFQLSLCW AA+LL HKLDFEASLMLAKQ+LNFDCK+E
Sbjct: 498  ENCLEYTMNNYQICTEPVSILQAFQLSLCWTAASLLNHKLDFEASLMLAKQNLNFDCKKE 557

Query: 320  VVDEINSRLWDLKDNFLLLTGNSKVIGSPKASKSSNRVYSNPEVTPEIELTKRDISKNIK 141
            VVDEINSRLW LK+NFL LTGNS V+  PKAS+SSN V+S  E T E+EL K D SKNIK
Sbjct: 558  VVDEINSRLWTLKENFLKLTGNSNVVSYPKASESSNGVFSYIEETTEVELVKNDNSKNIK 617

Query: 140  ETQEHQNQWGXXXXXXXXXXXXXXKDIGTERADFLRRYRIEWAAMR 3
              Q+ ++QW               KDI  E  +F RRY+I  AA++
Sbjct: 618  NFQKRKSQWNKLLLMQQEEKQKLKKDIENENDEFWRRYQIHRAAIQ 663


>ref|XP_003606359.1| Chromatin remodeling complex subunit [Medicago truncatula]
           gi|355507414|gb|AES88556.1| Chromatin remodeling complex
           subunit [Medicago truncatula]
          Length = 1283

 Score =  301 bits (771), Expect = 1e-79
 Identities = 160/257 (62%), Positives = 186/257 (72%), Gaps = 17/257 (6%)
 Frame = -1

Query: 722 INNVDQPSSKSNDEKSSARNKEGKSGDSVE--------------RPQGNNIETEKIRKQQ 585
           INNVDQ +SKSNDEKS  R+KEGKSGD V               +PQGN +E EKIR  Q
Sbjct: 41  INNVDQHASKSNDEKSCTRSKEGKSGDPVGNVSKSLFSSTAFVLKPQGNTVENEKIRTLQ 100

Query: 584 SSLHLSLKPKIAKLCEILLLPDNVKSMVENCLEYTMNNYQICTEPASILQAFQLSLCWIA 405
            SLH SLKP+IAKLCEIL LPDNVKSM    LEYTMNNY+ICTEP SILQAFQLSLCW A
Sbjct: 101 RSLHRSLKPEIAKLCEILHLPDNVKSMAGKFLEYTMNNYKICTEPVSILQAFQLSLCWTA 160

Query: 404 AALLKHKLDFEASLMLAKQHLNFDCKREVVDEINSRLWDLKDNFLLLTGNSKVIGSPKAS 225
           A+LL HKLD EASL+LAKQHLNFDC ++ VDEIN+ LWDLKD FLL TG+S V  SPKAS
Sbjct: 161 ASLLSHKLDTEASLILAKQHLNFDCNKDAVDEINAMLWDLKDKFLLRTGSSGVNCSPKAS 220

Query: 224 KSSNRVYSNPEVTPEIELTKR---DISKNIKETQEHQNQWGXXXXXXXXXXXXXXKDIGT 54
           +SSNRV+SN +VT ++ELTK+    IS+N KETQ+ ++QW               +D  T
Sbjct: 221 ESSNRVHSNTDVTSDVELTKKVISRISRNTKETQKRKDQWRELLHMQQENKLKLQRDFET 280

Query: 53  ERADFLRRYRIEWAAMR 3
           E AD  RRY+IEW A++
Sbjct: 281 EMADLGRRYKIEWVAIK 297


>ref|XP_002529415.1| mom(plant), putative [Ricinus communis] gi|223531092|gb|EEF32941.1|
            mom(plant), putative [Ricinus communis]
          Length = 1982

 Score =  162 bits (409), Expect = 1e-37
 Identities = 94/211 (44%), Positives = 130/211 (61%), Gaps = 15/211 (7%)
 Frame = -1

Query: 719  NNVDQPSSKSNDEKSSARNKEGKSGDSV-----ERPQGNNIETEK---IRKQQSSLHLSL 564
            +NV Q  S S+D  +++      S  S+     + P  N  ++ +   +   Q SLHL L
Sbjct: 839  HNVHQLMSGSSDHLNASYANHAPSLQSLTNVILDEPSSNMAKSNERINVHDSQKSLHLLL 898

Query: 563  KPKIAKLCEILLLPDNVKSMVENCLEYTMNNYQICTEPASILQAFQLSLCWIAAALLKHK 384
            KP +AKLCEIL LPDNVK+MV++ LEY MNN+ +  EPA+ILQAFQ+SLCW AA+LLKHK
Sbjct: 899  KPDMAKLCEILKLPDNVKAMVQSFLEYVMNNHHVIREPATILQAFQISLCWTAASLLKHK 958

Query: 383  LDFEASLMLAKQHLNFDCKREVVDEINSRLWDLKDNFLLLTGNSKVIGSPKASKSSNRVY 204
            +D + SL LAKQHLNF CK+E  D + S+   LK  FL  TGN  +  S + S+S  RV 
Sbjct: 959  IDHKESLALAKQHLNFGCKKEEADYVYSKFRCLKKVFLYHTGNVMLTCSSENSQSVTRVV 1018

Query: 203  SNPEVTP-------EIELTKRDISKNIKETQ 132
            +   +         ++ L K+D SK+IK+ +
Sbjct: 1019 NKEYLQARSGQELLQLGLAKQDFSKSIKDIE 1049


>ref|XP_002330022.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222871447|gb|EEF08578.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1441

 Score =  150 bits (379), Expect = 4e-34
 Identities = 91/232 (39%), Positives = 127/232 (54%), Gaps = 33/232 (14%)
 Frame = -1

Query: 725 LINNVDQPSSKSNDEKSSARNKEGKSGDSVERPQGNNIETEKIRKQQSSLHLSLKPKIAK 546
           L+N  D  +  SN  + +++  +    D V    G N+  +     + SLHL LKP+IAK
Sbjct: 294 LLNTTDA-NHVSNFSQLTSKLSQVLKADMVGYNGGRNLHDDS----EKSLHLFLKPEIAK 348

Query: 545 LCEILLLPDNVKSMVENCLEYTMNNYQICTEPASILQAFQLSLCWIAAALLKHKLDFEAS 366
           LCEIL LP+NVK MVE   EY +NN+ +  EP S+LQ F +SLCW AA++LKHKLD + S
Sbjct: 349 LCEILQLPENVKVMVEQFREYVLNNHHVSREPPSLLQGFLISLCWTAASMLKHKLDHKES 408

Query: 365 LMLAKQHLNFDCKREVVDEINSRLWDLKDNFLLLTGNSKVIGSPKAS------------- 225
           L LAK+HLNF CK++  D + S+L  L+  FL  TG  KV GSPKAS             
Sbjct: 409 LALAKEHLNFSCKKDEADFVYSKLRCLRKLFLYRTGTCKVAGSPKASGFSLEDFGQNQSN 468

Query: 224 --------------------KSSNRVYSNPEVTPEIELTKRDISKNIKETQE 129
                                 S + +S  +V   +EL ++D SK+IK+ ++
Sbjct: 469 GRSSLSTPSNKQKVRMEVENLRSGQEFSINQVLSHLELAQKDYSKSIKDIEK 520


Top