BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00024079
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546864.1| PREDICTED: DNA-directed RNA polymerases I, I...   115   3e-24
ref|XP_003531419.1| PREDICTED: DNA-directed RNA polymerases I, I...   113   1e-23
gb|AFK47081.1| unknown [Lotus japonicus]                              110   2e-22
ref|XP_003610520.1| DNA-directed RNA polymerases I, II, and III ...   109   3e-22
ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymer...    87   1e-15

>ref|XP_003546864.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Glycine max]
          Length = 145

 Score =  115 bits (289), Expect = 3e-24
 Identities = 61/74 (82%), Positives = 63/74 (85%), Gaps = 5/74 (6%)
 Frame = -1

Query: 358 SVSIQDKFEYIMHGRLYNISNDG-----GSKSQLEVEVYASFGGLQLMLRGHASHCVKFA 194
           SVSIQDKFEYIMHGRLYNI+         SK QLEVEVYASFGGLQLML+GHASHCVKFA
Sbjct: 72  SVSIQDKFEYIMHGRLYNITKPQLEEKECSKPQLEVEVYASFGGLQLMLKGHASHCVKFA 131

Query: 193 TDQKLFLLIRKVES 152
            DQKLFLLIRKVES
Sbjct: 132 VDQKLFLLIRKVES 145


>ref|XP_003531419.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Glycine max]
          Length = 160

 Score =  113 bits (283), Expect = 1e-23
 Identities = 62/89 (69%), Positives = 65/89 (73%), Gaps = 20/89 (22%)
 Frame = -1

Query: 358 SVSIQDKFEYIMHGRLYNIS--------------------NDGGSKSQLEVEVYASFGGL 239
           SVSIQDKFEYIMHGRLYNI+                    N+  SK QLEVEVYASFGGL
Sbjct: 72  SVSIQDKFEYIMHGRLYNITKPQLEKKEKKEKRSESQPEENEECSKPQLEVEVYASFGGL 131

Query: 238 QLMLRGHASHCVKFATDQKLFLLIRKVES 152
           QLML+GHASHCVKFA DQKLFLLIRKVES
Sbjct: 132 QLMLKGHASHCVKFAVDQKLFLLIRKVES 160


>gb|AFK47081.1| unknown [Lotus japonicus]
          Length = 138

 Score =  110 bits (274), Expect = 2e-22
 Identities = 56/69 (81%), Positives = 59/69 (85%)
 Frame = -1

Query: 358 SVSIQDKFEYIMHGRLYNISNDGGSKSQLEVEVYASFGGLQLMLRGHASHCVKFATDQKL 179
           SV I +KFEYIMHGRLYNI+ND   KSQ EVEVYASFGGLQLMLRGH S CVK A DQKL
Sbjct: 72  SVPIHEKFEYIMHGRLYNITND--EKSQHEVEVYASFGGLQLMLRGHVSRCVKLAVDQKL 129

Query: 178 FLLIRKVES 152
           FLLIRK+ES
Sbjct: 130 FLLIRKIES 138


>ref|XP_003610520.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
           [Medicago truncatula] gi|355511575|gb|AES92717.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC3 [Medicago truncatula]
          Length = 140

 Score =  109 bits (272), Expect = 3e-22
 Identities = 55/68 (80%), Positives = 60/68 (88%)
 Frame = -1

Query: 355 VSIQDKFEYIMHGRLYNISNDGGSKSQLEVEVYASFGGLQLMLRGHASHCVKFATDQKLF 176
           VSIQ+KFEYIM+GRLY+I  DG S+S  EVEVYASFGGLQLMLRG  SHCVKFA DQKLF
Sbjct: 73  VSIQEKFEYIMYGRLYDIKADGLSRSPPEVEVYASFGGLQLMLRGDPSHCVKFAVDQKLF 132

Query: 175 LLIRKVES 152
           LLIRK+ES
Sbjct: 133 LLIRKLES 140


>ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
           subunit RPABC3-like [Cucumis sativus]
           gi|449509097|ref|XP_004163492.1| PREDICTED: probable
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC3-like [Cucumis sativus]
          Length = 146

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 41/65 (63%), Positives = 51/65 (78%)
 Frame = -1

Query: 352 SIQDKFEYIMHGRLYNISNDGGSKSQLEVEVYASFGGLQLMLRGHASHCVKFATDQKLFL 173
           S+ DKFEYIMHG+ Y +S D GS S L+VEVYASFGGLQ++L+G   HC KF  DQ +FL
Sbjct: 82  SLADKFEYIMHGKTYKLS-DEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFL 140

Query: 172 LIRKV 158
           L+RK+
Sbjct: 141 LLRKL 145