BLASTX nr result

ID: Glycyrrhiza24_contig00023938 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00023938
         (754 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003541950.1| PREDICTED: ATP-dependent helicase rhp16-like...   184   7e-89
ref|XP_003539500.1| PREDICTED: ATP-dependent helicase rhp16-like...   184   1e-86
ref|XP_002524826.1| DNA repair helicase rad5,16, putative [Ricin...   162   6e-73
ref|XP_004158575.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependen...   172   2e-72
emb|CBI28814.3| unnamed protein product [Vitis vinifera]              158   2e-71

>ref|XP_003541950.1| PREDICTED: ATP-dependent helicase rhp16-like [Glycine max]
          Length = 924

 Score =  184 bits (466), Expect(2) = 7e-89
 Identities = 87/124 (70%), Positives = 104/124 (83%)
 Frame = +2

Query: 2   LADEMGMGKTIQAIALVLAKRELHQMSCEPDVPSHSPESSKPSIKGTLVVCPVVAVTQWV 181
           LADEMGMGKT+QAIALVLAKRE  ++ CEPD       S KP+IKGTLV+CPVVAVTQWV
Sbjct: 242 LADEMGMGKTVQAIALVLAKREF-ELGCEPDQSIPCSSSLKPAIKGTLVICPVVAVTQWV 300

Query: 182 SEIDRFTSRGSTKVLVYHGAKRGKSVEQFSQYDFVITTYSIVESEYRKYVMPPKDKCPYL 361
           SE+DRFT +GSTKVL+YHGA RG+S  +F+ YDFVITTYS+VESEYRK+++PPK++CPY 
Sbjct: 301 SEVDRFTLKGSTKVLIYHGANRGRSGNRFADYDFVITTYSVVESEYRKHMLPPKERCPYC 360

Query: 362 ENYF 373
              F
Sbjct: 361 GKLF 364



 Score =  170 bits (430), Expect(2) = 7e-89
 Identities = 95/142 (66%), Positives = 99/142 (69%), Gaps = 9/142 (6%)
 Frame = +1

Query: 352 PIFGKLFYQNKLSYHQKYFCGPDAVRTEXXXXXXXXXXIGVTKQKMKES--------KCL 507
           P  GKLF  NKL YHQ YFCGPDAVRTE            VTK K K+S           
Sbjct: 358 PYCGKLFLPNKLMYHQIYFCGPDAVRTEKQSKQAKKKKREVTKGKTKKSDSKISKSSNTK 417

Query: 508 NGEEMPFQIEDLDATGRG-KSFLQAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWA 684
             EEM    EDLDA  R  +S L AVKWQRIILDEAHYIKSRHCNTAKAVLALES+Y+WA
Sbjct: 418 KEEEMWMDEEDLDAPVRSDRSILHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWA 477

Query: 685 LSGTPLQNRVGELYSLIRFLQI 750
           LSGTPLQNRVGELYSLIRFLQI
Sbjct: 478 LSGTPLQNRVGELYSLIRFLQI 499


>ref|XP_003539500.1| PREDICTED: ATP-dependent helicase rhp16-like [Glycine max]
          Length = 926

 Score =  184 bits (467), Expect(2) = 1e-86
 Identities = 88/119 (73%), Positives = 103/119 (86%)
 Frame = +2

Query: 2   LADEMGMGKTIQAIALVLAKRELHQMSCEPDVPSHSPESSKPSIKGTLVVCPVVAVTQWV 181
           LADEMGMGKT+QAIALVLAKRE  Q SCEPD       S KP+IKGTLV+CPVVAVTQWV
Sbjct: 243 LADEMGMGKTVQAIALVLAKREFEQ-SCEPDQSIPCSSSLKPAIKGTLVICPVVAVTQWV 301

Query: 182 SEIDRFTSRGSTKVLVYHGAKRGKSVEQFSQYDFVITTYSIVESEYRKYVMPPKDKCPY 358
           SEIDRFT +G+TKVL+YHGA RG+S  +F+ YDFVITTYS+VESEYRK+++PPK++CPY
Sbjct: 302 SEIDRFTLKGNTKVLIYHGANRGRSGNRFADYDFVITTYSVVESEYRKHMLPPKERCPY 360



 Score =  162 bits (410), Expect(2) = 1e-86
 Identities = 90/143 (62%), Positives = 98/143 (68%), Gaps = 10/143 (6%)
 Frame = +1

Query: 352 PIFGKLFYQNKLSYHQKYFCGPDAVRTEXXXXXXXXXXIGVTKQKMKE---------SKC 504
           P  GKL+  NKL YHQ Y+CGPDAVRTE            VT+ K K+         S  
Sbjct: 359 PYCGKLYLPNKLIYHQNYYCGPDAVRTEKQSKQAKKKKREVTQGKTKKCDSKKMSRSSNK 418

Query: 505 LNGEEMPFQIEDLDA-TGRGKSFLQAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRW 681
              EE+    EDLDA     +S L AVKWQRIILDEAHYIKSRHCNTAKAVLALES+Y+W
Sbjct: 419 KKEEELWMDEEDLDAPVCSDRSILHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKW 478

Query: 682 ALSGTPLQNRVGELYSLIRFLQI 750
           ALSGTPLQNRVGELYSLIRFLQI
Sbjct: 479 ALSGTPLQNRVGELYSLIRFLQI 501


>ref|XP_002524826.1| DNA repair helicase rad5,16, putative [Ricinus communis]
           gi|223535886|gb|EEF37546.1| DNA repair helicase rad5,16,
           putative [Ricinus communis]
          Length = 874

 Score =  162 bits (410), Expect(2) = 6e-73
 Identities = 88/126 (69%), Positives = 99/126 (78%), Gaps = 2/126 (1%)
 Frame = +2

Query: 2   LADEMGMGKTIQAIALVLAKRELHQMSCEPDVPSHSPESS-KPS-IKGTLVVCPVVAVTQ 175
           LADEMGMGKTIQAIALVLAKRE+ + + E +  +  P SS  PS IK TLVVCPVVAVTQ
Sbjct: 183 LADEMGMGKTIQAIALVLAKREILRQNRESNGATLLPGSSIDPSGIKPTLVVCPVVAVTQ 242

Query: 176 WVSEIDRFTSRGSTKVLVYHGAKRGKSVEQFSQYDFVITTYSIVESEYRKYVMPPKDKCP 355
           WV EIDRFT+ GSTKVLVYHGA R KS + F  +DFVITTYS VE+E+RKY+MPPKDKC 
Sbjct: 243 WVKEIDRFTTEGSTKVLVYHGANREKSSKHFLGFDFVITTYSTVEAEFRKYMMPPKDKCA 302

Query: 356 YLENYF 373
           Y    F
Sbjct: 303 YCGKSF 308



 Score =  138 bits (348), Expect(2) = 6e-73
 Identities = 76/152 (50%), Positives = 91/152 (59%), Gaps = 21/152 (13%)
 Frame = +1

Query: 361 GKLFYQNKLSYHQKYFCGPDAVRTEXXXXXXXXXXIGVTKQKMKESKCLNGEEMPFQIED 540
           GK FY+NKL+ H KYFCGPDA RT               K K   ++    +E P   +D
Sbjct: 305 GKSFYENKLATHLKYFCGPDAFRTAKQSKQDRK------KLKTSPTEKARSDESPKIQDD 358

Query: 541 LD---------------------ATGRGKSFLQAVKWQRIILDEAHYIKSRHCNTAKAVL 657
           +D                     A  + KS L ++KW RIILDEAHY+K + CNTAKA+ 
Sbjct: 359 VDVISGRTYRKRHAAMEISEVELALRKEKSVLHSMKWDRIILDEAHYVKDKRCNTAKAIF 418

Query: 658 ALESSYRWALSGTPLQNRVGELYSLIRFLQIV 753
           ALESSY+WALSGTPLQNRVGELYSL+RFLQIV
Sbjct: 419 ALESSYKWALSGTPLQNRVGELYSLVRFLQIV 450


>ref|XP_004158575.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent helicase rhp16-like
           [Cucumis sativus]
          Length = 875

 Score =  172 bits (436), Expect(2) = 2e-72
 Identities = 89/126 (70%), Positives = 102/126 (80%), Gaps = 2/126 (1%)
 Frame = +2

Query: 2   LADEMGMGKTIQAIALVLAKRELHQMSCEPDVPSHSPESSK--PSIKGTLVVCPVVAVTQ 175
           LADEMGMGKTIQAIALVLAKR+L   +     PS +P SSK  P IK TLV+CPVVAV+Q
Sbjct: 187 LADEMGMGKTIQAIALVLAKRQLSG-TAGLRRPSSNPSSSKDLPLIKATLVICPVVAVSQ 245

Query: 176 WVSEIDRFTSRGSTKVLVYHGAKRGKSVEQFSQYDFVITTYSIVESEYRKYVMPPKDKCP 355
           WVSEIDRFTS GS KVLVYHG KR +S+E  S+YDFVITTYS+VE++YRKY+MPPKD+CP
Sbjct: 246 WVSEIDRFTSEGSYKVLVYHGPKRERSLEVLSEYDFVITTYSVVEADYRKYLMPPKDRCP 305

Query: 356 YLENYF 373
           Y    F
Sbjct: 306 YCSKLF 311



 Score =  127 bits (318), Expect(2) = 2e-72
 Identities = 72/146 (49%), Positives = 87/146 (59%), Gaps = 12/146 (8%)
 Frame = +1

Query: 352 PIFGKLFYQNKLSYHQKYFCGPDAVRTEXXXXXXXXXXIG---VTKQKMKESKCLNGEEM 522
           P   KLF++  L +H  Y CGPDAV+TE          I      ++K  + K  N  + 
Sbjct: 305 PYCSKLFHKKNLKFHLMYICGPDAVKTEKQSKQQRKRPIQPQICRQEKSDKDKNNNVHKS 364

Query: 523 PFQIEDL---------DATGRGKSFLQAVKWQRIILDEAHYIKSRHCNTAKAVLALESSY 675
             Q   L         D   RG S L +V W R+ILDEAH+IK R  NTAKAVLA+ SS+
Sbjct: 365 GGQKSTLGQTVEEHENDEKHRGNSILHSVIWDRVILDEAHFIKDRLSNTAKAVLAISSSF 424

Query: 676 RWALSGTPLQNRVGELYSLIRFLQIV 753
           RWALSGTP+QNRVGELYSL+RFLQIV
Sbjct: 425 RWALSGTPIQNRVGELYSLVRFLQIV 450


>emb|CBI28814.3| unnamed protein product [Vitis vinifera]
          Length = 964

 Score =  158 bits (399), Expect(2) = 2e-71
 Identities = 82/124 (66%), Positives = 91/124 (73%)
 Frame = +2

Query: 2   LADEMGMGKTIQAIALVLAKRELHQMSCEPDVPSHSPESSKPSIKGTLVVCPVVAVTQWV 181
           LADEMGMGKTIQAIALVL+KRE+ Q  C                  TLV+CPVVAV QWV
Sbjct: 303 LADEMGMGKTIQAIALVLSKREISQKIC------------------TLVICPVVAVLQWV 344

Query: 182 SEIDRFTSRGSTKVLVYHGAKRGKSVEQFSQYDFVITTYSIVESEYRKYVMPPKDKCPYL 361
           +EI RFT +GSTKVLVYHGA RGKS+ QFS+YDFVITTYSIVE+EYRK VMPPK KC + 
Sbjct: 345 NEIGRFTVKGSTKVLVYHGANRGKSIGQFSEYDFVITTYSIVEAEYRKNVMPPKQKCVFC 404

Query: 362 ENYF 373
              F
Sbjct: 405 RKLF 408



 Score =  137 bits (346), Expect(2) = 2e-71
 Identities = 72/134 (53%), Positives = 89/134 (66%), Gaps = 4/134 (2%)
 Frame = +1

Query: 364 KLFYQNKLSYHQKYFCGPDAVRTEXXXXXXXXXX---IGVTKQKMKESKCLN-GEEMPFQ 531
           KLFY +K+S H +YFCGPDA++T+             + ++    K  K +  G  +   
Sbjct: 406 KLFYPHKMSIHLRYFCGPDAIKTDKQSKQKKKEPKLELKISDSNYKPKKHMGFGPSIENS 465

Query: 532 IEDLDATGRGKSFLQAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNR 711
             D  +T   KS L +VKW RIILDEAH+IK R  NTAKAVLALES Y+WALSGTPLQNR
Sbjct: 466 AVDEQSTSTRKSILHSVKWDRIILDEAHFIKDRRSNTAKAVLALESEYKWALSGTPLQNR 525

Query: 712 VGELYSLIRFLQIV 753
           VGELYSLIRFL+I+
Sbjct: 526 VGELYSLIRFLRII 539


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