BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00023900
         (382 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...    64   1e-08
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]               62   6e-08
gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]             62   6e-08
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    62   6e-08
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...    61   8e-08

>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 676

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
 Frame = +2

Query: 14  AACGGVVR-----LITGFSCNLGSVGIIPGASKWRRILELV-------RSVIFEMDSKVV 157
           A  GGV+R      + GF+ N+G V   P A  W     LV       R V  E+DS +V
Sbjct: 531 ATAGGVIRDEHGSWLVGFALNIG-VCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALV 589

Query: 158 VNFVHCRVAGNAFLQPLISEICHMLHDPGWCTRVDHVYREANRAADWLASLGHSSPFHCN 337
           V F+   + G++     +  +CH      W  R+ HVYREANR AD LA+   + PF   
Sbjct: 590 VGFLQSGI-GDSHPLAFLVRLCHGFISKDWIVRITHVYREANRLADGLANYAFTLPFGFL 648

Query: 338 MLSVVPSPLGLILSE 382
           +L   P  +  IL E
Sbjct: 649 LLDSCPEHVSSILLE 663


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
 Frame = +2

Query: 14  AACGGVVRLITG-----FSCNLGSVGIIPGASKWRRILEL-------VRSVIFEMDSKVV 157
           A+ GGV+R  TG     FS N+G     P A  W     L       V  V  E+DS+V+
Sbjct: 584 ASAGGVLRDCTGAWCGGFSLNIGRCSA-PQAELWGVYYGLYFAWEKKVPRVELEVDSEVI 642

Query: 158 VNFVHCRVAGNAFLQPLISEICHMLHDPGWCTRVDHVYREANRAADWLASLGHSSPFHCN 337
           V F+   ++ +  L  L+  +CH      W  R+ HVYREANR AD LA+   S     +
Sbjct: 643 VGFLKTGISDSHPLSFLV-RLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFH 701

Query: 338 MLSVVPSPLGLILSE 382
              +VP  +  +L E
Sbjct: 702 SFDLVPDAMSSLLRE 716


>gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]
          Length = 803

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 47/135 (34%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
 Frame = +2

Query: 14   AACGGVVR-----LITGFSCNLGSVGIIPGASKWRRIL-------ELVRSVIFEMDSKVV 157
            A  GGV+R        GF+ N+G     P A  W           + +  V  E+DS++V
Sbjct: 658  ATAGGVIRDGAGNWCGGFALNIGRCSA-PLAELWGVYYGFYLAWTKALTRVELEVDSELV 716

Query: 158  VNFVHCRVAGNAFLQPLISEICHMLHDPGWCTRVDHVYREANRAADWLASLGHSSPFHCN 337
            V F+   +     L  L+  +CH L    W  R+ HVYREANR AD LA+   S P   +
Sbjct: 717  VGFLKTGIGDQHPLSFLV-RLCHGLLSKDWIVRITHVYREANRLADGLANYAFSLPLGFH 775

Query: 338  MLSVVPSPLGLILSE 382
             L  VP  L +IL E
Sbjct: 776  SLIDVPDDLEVILHE 790


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
 Frame = +2

Query: 14  AACGGVVRLITG-----FSCNLGSVGIIPGASKWRRILEL-------VRSVIFEMDSKVV 157
           A+ GGV+R  TG     FS N+G     P A  W     L       V  V  E+DS+V+
Sbjct: 475 ASAGGVLRDCTGAWCGGFSLNIGRCSA-PQAELWGVYYGLYFAWEKKVPRVELEVDSEVI 533

Query: 158 VNFVHCRVAGNAFLQPLISEICHMLHDPGWCTRVDHVYREANRAADWLASLGHSSPFHCN 337
           V F+   ++ +  L  L+  +CH      W  R+ HVYREANR AD LA+   S     +
Sbjct: 534 VGFLKTGISDSHPLSFLV-RLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFH 592

Query: 338 MLSVVPSPLGLILSE 382
              +VP  +  +L E
Sbjct: 593 SFDLVPDAMSSLLRE 607


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 48/133 (36%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
 Frame = +2

Query: 14  AACGGVVR-----LITGFSCNLGSVGIIPGASKWRRILEL-------VRSVIFEMDSKVV 157
           A  GGV+R      I GF+ N+G V   P A  W     L        R V  E+DSK+V
Sbjct: 176 ATAGGVLRDHNGAWIGGFAVNIG-VCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMV 234

Query: 158 VNFVHCRVAGNAFLQPLISEICHMLHDPGWCTRVDHVYREANRAADWLASLGHSSPFHCN 337
           V F+   +A +  L  L+  +C+     GW  R+ HVYREANR AD LA+   S     +
Sbjct: 235 VGFLTTGIADSHPLSFLL-RLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLH 293

Query: 338 MLSVVPSPLGLIL 376
           +L   P  +  IL
Sbjct: 294 LLESRPDVVSSIL 306