BLASTX nr result
ID: Glycyrrhiza24_contig00023870
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00023870
(572 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me... 276 1e-72
ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D sub... 275 3e-72
ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D sub... 265 5e-69
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 200 1e-49
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar... 189 3e-46
>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1687
Score = 276 bits (707), Expect = 1e-72
Identities = 133/189 (70%), Positives = 157/189 (83%)
Frame = +3
Query: 3 SFIKAAKSGIMDNLQGSLDALAWGNCLSMGTSGQFDIIYSEKVQELAKPVDVYSLLETSS 182
SF+KAAKSGI+DNLQG+LDALAWGNCL MGT GQFDIIYSEKV+E+ K VDVY LLETS
Sbjct: 1421 SFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLETSF 1480
Query: 183 FPLNFEVDSLHSQKYSSDKCNSEFRYKDGGYALKECKQWKSIVRNFLTVNDIQKLSSASR 362
++ E++ S+KYSS KC+S+FR K+GGY KE KQWKS++RNF+T NDIQ+L+ +R
Sbjct: 1481 NQMDQEINIPQSRKYSSGKCSSDFRSKNGGYTPKEPKQWKSVLRNFMTANDIQRLTFDAR 1540
Query: 363 SILKKYSIDQVLSEKDKLTIMKVLHFHPHRNEKFGSGPEDIKVGWHPIHKSSRCFHIIRN 542
IL KY ID+ LSE DKLTIMKVLHFHP R+EKFGSGP++IKVGWHP SRCF IIR
Sbjct: 1541 VILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRK 1600
Query: 543 DGTVEDFSY 569
DG+VEDFSY
Sbjct: 1601 DGSVEDFSY 1609
>ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
Length = 1622
Score = 275 bits (704), Expect = 3e-72
Identities = 135/188 (71%), Positives = 158/188 (84%)
Frame = +3
Query: 6 FIKAAKSGIMDNLQGSLDALAWGNCLSMGTSGQFDIIYSEKVQELAKPVDVYSLLETSSF 185
FIKAAKSG DNLQGSLD LAWGNCLSMGTSG FD+IYSEK ++AK VDVY LLE S
Sbjct: 1243 FIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFD 1302
Query: 186 PLNFEVDSLHSQKYSSDKCNSEFRYKDGGYALKECKQWKSIVRNFLTVNDIQKLSSASRS 365
N ++ + H KYSSDKC SEFR+K+G YALKE KQWK+I+RNF+TVNDIQKL+ ASR
Sbjct: 1303 KPNNKIGT-HLHKYSSDKCGSEFRHKNG-YALKEGKQWKTILRNFVTVNDIQKLTFASRC 1360
Query: 366 ILKKYSIDQVLSEKDKLTIMKVLHFHPHRNEKFGSGPEDIKVGWHPIHKSSRCFHIIRND 545
IL KYSID++LSE D+ T+++VL+FHPH++EKFG GP+DIKVGWHP +K SRCFHIIR D
Sbjct: 1361 ILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTD 1420
Query: 546 GTVEDFSY 569
GTVEDFSY
Sbjct: 1421 GTVEDFSY 1428
>ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
Length = 1461
Score = 265 bits (676), Expect = 5e-69
Identities = 134/188 (71%), Positives = 156/188 (82%)
Frame = +3
Query: 6 FIKAAKSGIMDNLQGSLDALAWGNCLSMGTSGQFDIIYSEKVQELAKPVDVYSLLETSSF 185
FIKAAKSG+ DNLQGSLDALAWGNCLSMGTSG FDIIYSEKV AK +VY LLE S
Sbjct: 1250 FIKAAKSGVTDNLQGSLDALAWGNCLSMGTSGMFDIIYSEKV---AKSGNVYELLEASFD 1306
Query: 186 PLNFEVDSLHSQKYSSDKCNSEFRYKDGGYALKECKQWKSIVRNFLTVNDIQKLSSASRS 365
N + + H KYSSDKC SEFR+K+G YALKE KQWK+I+RNF+TVNDIQKL+ ASR
Sbjct: 1307 KPNNKAGT-HLHKYSSDKCGSEFRHKNG-YALKEGKQWKTILRNFVTVNDIQKLTFASRC 1364
Query: 366 ILKKYSIDQVLSEKDKLTIMKVLHFHPHRNEKFGSGPEDIKVGWHPIHKSSRCFHIIRND 545
IL KYSID++LSE D+ T+++VL+FHP ++EKFG GP+DIKVGWHP +K SRCFHI+R D
Sbjct: 1365 ILNKYSIDELLSESDRSTMLRVLNFHPRKSEKFGIGPQDIKVGWHPKYKDSRCFHIVRID 1424
Query: 546 GTVEDFSY 569
GTVEDFSY
Sbjct: 1425 GTVEDFSY 1432
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 200 bits (509), Expect = 1e-49
Identities = 107/194 (55%), Positives = 141/194 (72%), Gaps = 6/194 (3%)
Frame = +3
Query: 9 IKAAKSGIMDNLQGSLDALAWGNCLSMGTSGQFDIIYSEKVQELAKPVDVYSLL--ETSS 182
IKAAK+GI DNL GSLDALAWG S+GT GQFDI+YS K EL KPVDVY+LL +++
Sbjct: 1249 IKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTC 1308
Query: 183 FPLNFEVDSLHSQKYSSDKCNSEFRYKDGGYALKECKQW----KSIVRNFLTVNDIQKLS 350
N +++SL S +K +++ K+GG +K K+ KSI+R FLT+NDIQKLS
Sbjct: 1309 EKQNTKIESLDKNTIS-EKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLS 1367
Query: 351 SASRSILKKYSIDQVLSEKDKLTIMKVLHFHPHRNEKFGSGPEDIKVGWHPIHKSSRCFH 530
A R+IL KYS+++ L+E DK T+M L+FHPHR+EK G G +DIKVG H ++++RCF
Sbjct: 1368 FALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFV 1427
Query: 531 IIRNDGTVEDFSYH 572
+IR+DGT EDFSYH
Sbjct: 1428 LIRSDGTTEDFSYH 1441
>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
[Populus trichocarpa]
Length = 1517
Score = 189 bits (480), Expect = 3e-46
Identities = 101/194 (52%), Positives = 134/194 (69%), Gaps = 6/194 (3%)
Frame = +3
Query: 6 FIKAAKSGIMDNLQGSLDALAWGNCLSMGTSGQFDIIYSEKVQELAKPVDVYSLLETS-- 179
FI+AAK+G++D+LQGS+DALAWG ++GT GQFDI+YS K E +KPVDVY+LL +
Sbjct: 1282 FIRAAKAGVVDDLQGSIDALAWGKVPAIGT-GQFDIVYSGKGLEFSKPVDVYNLLGSQMI 1340
Query: 180 SFPLNFEVDSLHSQKYSSDKCNSEFRYKDGGYALKECKQWKSIVRNFL----TVNDIQKL 347
S N E L +Q Y SDKC ++F +K GG K K + I R+FL T +DIQ++
Sbjct: 1341 STEQNTEFGVLDAQIYKSDKCGAQFLHKFGGCGPKGFKVKEGIPRSFLRRLLTYDDIQRM 1400
Query: 348 SSASRSILKKYSIDQVLSEKDKLTIMKVLHFHPHRNEKFGSGPEDIKVGWHPIHKSSRCF 527
S R IL KYS+DQ L+E DK +M L+FHP R+EK G G +DIKV HP ++ +RCF
Sbjct: 1401 SYTVRKILNKYSVDQQLNESDKSVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCF 1460
Query: 528 HIIRNDGTVEDFSY 569
++R DGT+EDFSY
Sbjct: 1461 SLVRTDGTIEDFSY 1474