BLASTX nr result
ID: Glycyrrhiza24_contig00023736
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00023736
(434 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003588474.1| Pentatricopeptide repeat-containing protein ... 224 6e-57
ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containi... 219 2e-55
ref|XP_003540920.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 186 2e-45
ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258... 176 2e-42
emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera] 176 2e-42
>ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 668
Score = 224 bits (571), Expect = 6e-57
Identities = 112/144 (77%), Positives = 122/144 (84%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEALGLFVRMQREDYAATDFTY 182
+RCG L E++ VFDE+ SKNEVSWNALI G+ARKGEGEEALGLFV+MQRE + AT+FTY
Sbjct: 241 ARCGELRESRLVFDEL-ESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTY 299
Query: 183 XXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVK 362
EQGKWLHAHMMKSG+KLVGYVGNTLLHMYAKSG+I DAKKVFDRLVK
Sbjct: 300 SALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVK 359
Query: 363 VDVVSCNSMLIGYAQHGLGKEAVE 434
VDVVSCNSMLIGYAQHGLGKEAVE
Sbjct: 360 VDVVSCNSMLIGYAQHGLGKEAVE 383
Score = 79.3 bits (194), Expect = 3e-13
Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEA---LGLFVRMQREDYAATD 173
++CG L+ A+ VFDE+ K+ V+W ++I GY++ G A L LF+ M R+ +
Sbjct: 137 AKCGSLEIARQVFDEM-CVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNE 195
Query: 174 FTYXXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDR 353
F GK +H K G + +VG++L+ MYA+ G + +++ VFD
Sbjct: 196 FALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDE 255
Query: 354 LVKVDVVSCNSMLIGYAQHGLGKEAV 431
L + VS N+++ G+A+ G G+EA+
Sbjct: 256 LESKNEVSWNALISGFARKGEGEEAL 281
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = +3
Query: 222 EQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVKVDVVSCNSMLIGY 401
+QGK +H H+M S + + N++L MYAK GS+ A++VFD + DVV+ SM+ GY
Sbjct: 108 KQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGY 167
Query: 402 AQHGLGKEA 428
+Q G A
Sbjct: 168 SQDGYASSA 176
>ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 219 bits (558), Expect = 2e-55
Identities = 109/144 (75%), Positives = 118/144 (81%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEALGLFVRMQREDYAATDFTY 182
+RCGYL EA VFD++G KNEVSWNALI GYARKGEGEEAL LFVRMQRE Y T+FTY
Sbjct: 221 ARCGYLGEAMLVFDKLGC-KNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTY 279
Query: 183 XXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVK 362
EQGKWLHAH+MKS +KLVGYVGNTLLHMYAKSGSI DA+KVFD+LVK
Sbjct: 280 SALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVK 339
Query: 363 VDVVSCNSMLIGYAQHGLGKEAVE 434
VDVVSCNSMLIGYAQHGLGKEA +
Sbjct: 340 VDVVSCNSMLIGYAQHGLGKEAAQ 363
Score = 85.9 bits (211), Expect = 3e-15
Identities = 50/143 (34%), Positives = 80/143 (55%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEALGLFVRMQREDYAATDFTY 182
+RCG L+ A+ +FDE+ ++ VSW ++I GYA+ +AL LF RM + +FT
Sbjct: 120 ARCGSLEGARRLFDEM-PHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTL 178
Query: 183 XXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVK 362
G+ +HA K G +VG++L+ MYA+ G + +A VFD+L
Sbjct: 179 SSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGC 238
Query: 363 VDVVSCNSMLIGYAQHGLGKEAV 431
+ VS N+++ GYA+ G G+EA+
Sbjct: 239 KNEVSWNALIAGYARKGEGEEAL 261
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/70 (38%), Positives = 45/70 (64%)
Frame = +3
Query: 222 EQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVKVDVVSCNSMLIGY 401
++GK +H H++ S K + N+LL MYA+ GS+ A+++FD + D+VS SM+ GY
Sbjct: 91 KEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGY 150
Query: 402 AQHGLGKEAV 431
AQ+ +A+
Sbjct: 151 AQNDRASDAL 160
>ref|XP_003540920.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Glycine max]
Length = 622
Score = 186 bits (472), Expect = 2e-45
Identities = 95/144 (65%), Positives = 105/144 (72%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEALGLFVRMQREDYAATDFTY 182
+RCGYL E VFD KNEVSWNALIGGYA+KGEGEEAL L++RMQ E Y FTY
Sbjct: 196 ARCGYLGEEXLVFDN-SWCKNEVSWNALIGGYAKKGEGEEALALYLRMQMEAYKPIQFTY 254
Query: 183 XXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVK 362
EQGKWL AH+MK G+KLV YVGNTLLHMYAK G I D +K FD+LVK
Sbjct: 255 SGILSSYLSMGCLEQGKWLLAHLMKPGQKLVVYVGNTLLHMYAKLGKIRDVEKFFDKLVK 314
Query: 363 VDVVSCNSMLIGYAQHGLGKEAVE 434
VDVVSCNSML YAQHGLGKEA++
Sbjct: 315 VDVVSCNSMLTRYAQHGLGKEAMQ 338
Score = 62.8 bits (151), Expect = 3e-08
Identities = 43/143 (30%), Positives = 70/143 (48%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEALGLFVRMQREDYAATDFTY 182
+RCG L + Q VF+E K+ V+W ++I GYA+ ++ L LF R+ E F
Sbjct: 110 ARCGNLKDTQHVFNE-KLQKDMVTWTSMISGYAQNERAKDTLVLFPRILSEGTKLNXFIL 168
Query: 183 XXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVK 362
+HA G +VG++L++M A+ G + + VFD
Sbjct: 169 ---------------SSLIHASCWMYGCHSNVFVGSSLVNMXARCGYLGEEXLVFDNSWC 213
Query: 363 VDVVSCNSMLIGYAQHGLGKEAV 431
+ VS N+++ GYA+ G G+EA+
Sbjct: 214 KNEVSWNALIGGYAKKGEGEEAL 236
>ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 176 bits (445), Expect = 2e-42
Identities = 87/144 (60%), Positives = 108/144 (75%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEALGLFVRMQREDYAATDFTY 182
+RCG++D AQ FD + +K+EVSWNALI G+ARKGEGE AL L +MQR+++ T FTY
Sbjct: 235 ARCGHMDAAQLAFDGM-PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTY 293
Query: 183 XXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVK 362
EQGKW+HAHM+KSG KL+ ++GNTLL MYAK+GSI DAK+VFDRLVK
Sbjct: 294 SSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVK 353
Query: 363 VDVVSCNSMLIGYAQHGLGKEAVE 434
DVVS N+ML G AQHGLGKE ++
Sbjct: 354 PDVVSWNTMLTGCAQHGLGKETLD 377
Score = 85.5 bits (210), Expect = 4e-15
Identities = 48/143 (33%), Positives = 79/143 (55%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEALGLFVRMQREDYAATDFTY 182
++CG LD+A+ +FDE+ +K+ V+W ALI G+++ +AL LF +M R + FT
Sbjct: 134 AKCGCLDDARRMFDEM-PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTL 192
Query: 183 XXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVK 362
+ G LHA +K G + YVG+ L+ MYA+ G + A+ FD +
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT 252
Query: 363 VDVVSCNSMLIGYAQHGLGKEAV 431
VS N+++ G+A+ G G+ A+
Sbjct: 253 KSEVSWNALISGHARKGEGEHAL 275
>emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 176 bits (445), Expect = 2e-42
Identities = 87/144 (60%), Positives = 108/144 (75%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEALGLFVRMQREDYAATDFTY 182
+RCG++D AQ FD + +K+EVSWNALI G+ARKGEGE AL L +MQR+++ T FTY
Sbjct: 235 ARCGHMDAAQLAFDGM-PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTY 293
Query: 183 XXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVK 362
EQGKW+HAHM+KSG KL+ ++GNTLL MYAK+GSI DAK+VFDRLVK
Sbjct: 294 SSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVK 353
Query: 363 VDVVSCNSMLIGYAQHGLGKEAVE 434
DVVS N+ML G AQHGLGKE ++
Sbjct: 354 PDVVSWNTMLTGCAQHGLGKETLD 377
Score = 84.0 bits (206), Expect = 1e-14
Identities = 48/143 (33%), Positives = 78/143 (54%)
Frame = +3
Query: 3 SRCGYLDEAQAVFDEIGSSKNEVSWNALIGGYARKGEGEEALGLFVRMQREDYAATDFTY 182
++CG LD+A+ +FDE+ +K+ V+W ALI G+++ +AL LF +M R FT
Sbjct: 134 AKCGCLDDARRMFDEM-PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTL 192
Query: 183 XXXXXXXXXXXXXEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGSISDAKKVFDRLVK 362
+ G LHA +K G + YVG+ L+ MYA+ G + A+ FD +
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT 252
Query: 363 VDVVSCNSMLIGYAQHGLGKEAV 431
VS N+++ G+A+ G G+ A+
Sbjct: 253 KSEVSWNALISGHARKGEGEHAL 275