BLASTX nr result

ID: Glycyrrhiza24_contig00023567 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00023567
         (260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    98   6e-19
ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containi...    95   7e-18
ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containi...    93   2e-17
emb|CBI16128.3| unnamed protein product [Vitis vinifera]               85   5e-15
emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]    85   7e-15

>ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 53/73 (72%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
 Frame = +3

Query: 48  LMQQLTTQAHFSS---NVLLHEAIVNAYVHSQSPDQALYFLHQMIHRGHAPSSNTFNNVL 218
           LM QLT QAHF+S      L++AIVNAYVHS S DQAL FLH MIH GHAP SNTFNN+L
Sbjct: 73  LMLQLT-QAHFTSCSTYTPLYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLL 131

Query: 219 SLLIRSNCFDKAW 257
            LLIRSN FDKAW
Sbjct: 132 CLLIRSNYFDKAW 144


>ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 50/73 (68%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
 Frame = +3

Query: 48  LMQQLTTQAHF---SSNVLLHEAIVNAYVHSQSPDQALYFLHQMIHRGHAPSSNTFNNVL 218
           LM QLT QAHF   S+   L++ +VNAYVHS S DQAL FLH MIH GH P SNTFNN+L
Sbjct: 73  LMLQLT-QAHFTPCSTYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLL 131

Query: 219 SLLIRSNCFDKAW 257
            LLIRSN FDKAW
Sbjct: 132 CLLIRSNYFDKAW 144


>ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 49/73 (67%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
 Frame = +3

Query: 48  LMQQLTTQAHFSSNVL---LHEAIVNAYVHSQSPDQALYFLHQMIHRGHAPSSNTFNNVL 218
           LM QLT QAHF+  +    L++ IVNAYVHS S DQAL FLH MIH GH P SNTFNN++
Sbjct: 73  LMLQLT-QAHFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLM 131

Query: 219 SLLIRSNCFDKAW 257
            LLIRSN FDKAW
Sbjct: 132 CLLIRSNYFDKAW 144


>emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 41/67 (61%), Positives = 53/67 (79%), Gaps = 3/67 (4%)
 Frame = +3

Query: 66  TQAH---FSSNVLLHEAIVNAYVHSQSPDQALYFLHQMIHRGHAPSSNTFNNVLSLLIRS 236
           TQ H   F ++VL+HEAI+NA+V SQ P+QAL++ +QMI RG  P SNTFNN+L LLI+S
Sbjct: 84  TQPHLDSFPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKS 143

Query: 237 NCFDKAW 257
           N F+KAW
Sbjct: 144 NFFEKAW 150


>emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 41/67 (61%), Positives = 53/67 (79%), Gaps = 3/67 (4%)
 Frame = +3

Query: 66  TQAH---FSSNVLLHEAIVNAYVHSQSPDQALYFLHQMIHRGHAPSSNTFNNVLSLLIRS 236
           TQ H   F ++VL+HEAI+NA+V SQ P+QAL++ +QMI RG  P SNTFNN+L LLI+S
Sbjct: 71  TQPHLDSFPTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKS 130

Query: 237 NCFDKAW 257
           N F+KAW
Sbjct: 131 NFFEKAW 137


Top