BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00023021
         (575 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003625044.1| Pentatricopeptide repeat-containing protein ...   323   1e-86
ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containi...   293   1e-77
ref|XP_002530223.1| pentatricopeptide repeat-containing protein,...   263   2e-68
ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|2...   258   4e-67
ref|XP_003529745.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   249   3e-64

>ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500059|gb|AES81262.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 521

 Score =  323 bits (828), Expect = 1e-86
 Identities = 160/191 (83%), Positives = 176/191 (92%)
 Frame = -2

Query: 574 AYRVFSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALIL 395
           A RVFSEMK+ANVAPN VT NTLING+GQ G++EMGIGLFEEM RN+VKADILTYN LIL
Sbjct: 310 ANRVFSEMKLANVAPNVVTYNTLINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLIL 369

Query: 394 GLCKDGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYS 215
           GLCK+GKTKKAAY+VKEL DK  L PNASTFSALI GQCVRNN+ERAFLVYR+M+RSG+S
Sbjct: 370 GLCKEGKTKKAAYMVKEL-DKGNLVPNASTFSALIAGQCVRNNSERAFLVYRSMVRSGFS 428

Query: 214 PNENTFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALML 35
           PNENTF ML SAFC NEDFDGAVQVLRDML+RFMTPDSS+LS+VYSGLCRCGRKQ ALML
Sbjct: 429 PNENTFRMLASAFCKNEDFDGAVQVLRDMLERFMTPDSSILSEVYSGLCRCGRKQFALML 488

Query: 34  CSEMEARRLLP 2
           CSE+EA+RLLP
Sbjct: 489 CSEIEAKRLLP 499



 Score = 79.3 bits (194), Expect = 4e-13
 Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 1/186 (0%)
 Frame = -2

Query: 562 FSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALILGLCK 383
           F +MK     P   + N  ++    +   E+ +  + +M RN++  ++ T N ++   CK
Sbjct: 173 FVKMKEYGFFPTVESCNAFLSSMLYLKRPELVVSFYRQMRRNRISPNVYTINMVVSAYCK 232

Query: 382 DGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMI-RSGYSPNE 206
            G+  KA+ V++++ D   L PN  TF++LI+G C +     A  V   M+ ++G  PN 
Sbjct: 233 LGELNKASEVLEKMKDM-GLCPNVVTFNSLISGYCDKGLLGLALKVRDLMMGKNGVFPNV 291

Query: 205 NTFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALMLCSE 26
            TF+ LI+ FC       A +V  +M    + P+    + + +G  + G  ++ + L  E
Sbjct: 292 VTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNTLINGFGQAGNSEMGIGLFEE 351

Query: 25  MEARRL 8
           ME  ++
Sbjct: 352 MERNKV 357



 Score = 79.0 bits (193), Expect = 5e-13
 Identities = 46/187 (24%), Positives = 90/187 (48%)
 Frame = -2

Query: 562 FSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALILGLCK 383
           + +M+   ++PN  T N +++ Y ++G+      + E+M    +  +++T+N+LI G C 
Sbjct: 208 YRQMRRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYCD 267

Query: 382 DGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYSPNEN 203
            G    A  V   ++ K  + PN  TF+ LI G C       A  V+  M  +  +PN  
Sbjct: 268 KGLLGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVV 327

Query: 202 TFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALMLCSEM 23
           T++ LI+ F    + +  + +  +M    +  D    + +  GLC+ G+ + A  +  E+
Sbjct: 328 TYNTLINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMVKEL 387

Query: 22  EARRLLP 2
           +   L+P
Sbjct: 388 DKGNLVP 394


>ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
           gi|356526065|ref|XP_003531640.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  293 bits (750), Expect = 1e-77
 Identities = 147/191 (76%), Positives = 165/191 (86%)
 Frame = -2

Query: 574 AYRVFSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALIL 395
           A RVF+EMKVANV P+ VT NTL+NGYGQVGD+EMG+ ++EEM RN +KADILTYNALIL
Sbjct: 314 ANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALIL 373

Query: 394 GLCKDGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYS 215
           GLCKDGKTKKAA  V+EL DKE L PNASTFSALITGQCVRNN+ERAFL+YR+M+RSG S
Sbjct: 374 GLCKDGKTKKAAGFVREL-DKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCS 432

Query: 214 PNENTFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALML 35
           PN  TF MLISAFC NEDFDGAVQVLRDML R M+PD S +S++  GLCRCG+ QLAL L
Sbjct: 433 PNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLSTMSELCDGLCRCGKNQLALAL 492

Query: 34  CSEMEARRLLP 2
           CSEME RRLLP
Sbjct: 493 CSEMEVRRLLP 503



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 48/179 (26%), Positives = 86/179 (48%)
 Frame = -2

Query: 538 VAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALILGLCKDGKTKKAA 359
           V+PN  T N +I  Y  +G+ + G  + E+M    +  +++++N LI G C  G     A
Sbjct: 221 VSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFG-LA 279

Query: 358 YVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYSPNENTFHMLISA 179
             VK L+ +  + PN  TF+ LI G C       A  V+  M  +   P+  T++ L++ 
Sbjct: 280 LKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNG 339

Query: 178 FCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALMLCSEMEARRLLP 2
           +    D +  V+V  +M+   +  D    + +  GLC+ G+ + A     E++   L+P
Sbjct: 340 YGQVGDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVP 398


>ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530270|gb|EEF32170.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  263 bits (672), Expect = 2e-68
 Identities = 128/190 (67%), Positives = 159/190 (83%)
 Frame = -2

Query: 574 AYRVFSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALIL 395
           A +VFSEMKV NVAPNT+T NTLING+ Q+G++EMG  L+EEM RN VKADILTYNALIL
Sbjct: 305 ASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALIL 364

Query: 394 GLCKDGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYS 215
           GLCK+GKTKKAAY+VKEL DKE L PNASTFSALI+GQC+RNN++RAF +Y++M+R G  
Sbjct: 365 GLCKEGKTKKAAYMVKEL-DKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCH 423

Query: 214 PNENTFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALML 35
           PNE TF+ML+SAFC NEDF+GA  VL +M +R  TP S VLS++Y GLC CG++ LA+ L
Sbjct: 424 PNEQTFNMLVSAFCKNEDFEGAFLVLMEMFERCFTPGSDVLSEIYHGLCCCGKEHLAMKL 483

Query: 34  CSEMEARRLL 5
            SE++AR ++
Sbjct: 484 SSELKARHMM 493


>ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|222861287|gb|EEE98829.1|
           predicted protein [Populus trichocarpa]
          Length = 478

 Score =  258 bits (660), Expect = 4e-67
 Identities = 129/191 (67%), Positives = 153/191 (80%)
 Frame = -2

Query: 574 AYRVFSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALIL 395
           A R FSEMKV NV PNTVT NTLINGYGQVG++ M   ++EEM RN VKADILTYNALIL
Sbjct: 288 ANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALIL 347

Query: 394 GLCKDGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYS 215
           GLCK+GKTKKAA++VKEL DKE L PNAST+SALI+GQC R N++RAF +Y++M+RSG  
Sbjct: 348 GLCKEGKTKKAAFLVKEL-DKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCH 406

Query: 214 PNENTFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALML 35
           PNE TF ML SAF  NEDF+GA  VL DM  R M  DS+ L ++Y GLC+CG++ LA+ L
Sbjct: 407 PNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNTLLEIYDGLCQCGKENLAMKL 466

Query: 34  CSEMEARRLLP 2
           C EMEARRL+P
Sbjct: 467 CHEMEARRLIP 477



 Score = 82.0 bits (201), Expect = 6e-14
 Identities = 51/191 (26%), Positives = 91/191 (47%)
 Frame = -2

Query: 574 AYRVFSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALIL 395
           A   + EM+   ++PN+ T N +++   + G  E  + +  EM    +  ++++YN LI 
Sbjct: 183 ALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIA 242

Query: 394 GLCKDGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYS 215
           G C  G    A  + K L+ K  L PN  TF++LI G C       A   +  M     +
Sbjct: 243 GHCNKGLLSIATKL-KNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVT 301

Query: 214 PNENTFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALML 35
           PN  T++ LI+ +    + + A +V  +M+   +  D    + +  GLC+ G+ + A  L
Sbjct: 302 PNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFL 361

Query: 34  CSEMEARRLLP 2
             E++   L+P
Sbjct: 362 VKELDKENLVP 372



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 47/181 (25%), Positives = 85/181 (46%)
 Frame = -2

Query: 565 VFSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALILGLC 386
           VFS MK     P   + N  ++        ++ +  + EM R ++  +  T+N ++  LC
Sbjct: 151 VFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALC 210

Query: 385 KDGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYSPNE 206
           K GK +KA  V++E+ +   + PN  +++ LI G C +     A  +   M ++G  PN 
Sbjct: 211 KSGKLEKAVEVLREM-ESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNV 269

Query: 205 NTFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALMLCSE 26
            TF+ LI  FC       A +   +M    +TP++   + + +G  + G   +A  +  E
Sbjct: 270 VTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEE 329

Query: 25  M 23
           M
Sbjct: 330 M 330


>ref|XP_003529745.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g26680, mitochondrial-like, partial [Glycine
           max]
          Length = 437

 Score =  249 bits (635), Expect = 3e-64
 Identities = 132/185 (71%), Positives = 146/185 (78%)
 Frame = -2

Query: 574 AYRVFSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALIL 395
           A RVF+EMKV +VAPN VT NTL+NGYGQVGD         EM RN VKADILT NALIL
Sbjct: 257 ANRVFNEMKVXHVAPNVVTYNTLLNGYGQVGD--------REMVRNGVKADILTINALIL 308

Query: 394 GLCKDGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYS 215
           GLCKDGKTKKAA  V+EL DKE L  N STFSALITG CVRNN+ER FL+YR+M+RSGYS
Sbjct: 309 GLCKDGKTKKAAGFVREL-DKENLVSNXSTFSALITGLCVRNNSERPFLIYRSMVRSGYS 367

Query: 214 PNENTFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALML 35
           PNE+ F MLISAF  NEDFDG VQVLRDML R M+PD S LS++  GLCRCG+ QLAL L
Sbjct: 368 PNEHIFQMLISAFYKNEDFDGDVQVLRDMLGRLMSPDLSTLSELCDGLCRCGKNQLALAL 427

Query: 34  CSEME 20
           CS +E
Sbjct: 428 CSVVE 432



 Score = 68.2 bits (165), Expect = 9e-10
 Identities = 46/178 (25%), Positives = 81/178 (45%)
 Frame = -2

Query: 538 VAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQVKADILTYNALILGLCKDGKTKKAA 359
           V+PN  T N  I  Y  +G+ + G  +  +M    +  +++++N LI G C  G     A
Sbjct: 164 VSPNVYTLNMAIRAYCMLGEVQKGFEMSXKMMGMVLSPNVVSFNTLISGYCNKGLFG-LA 222

Query: 358 YVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYSPNENTFHMLISA 179
             VK L+ +  + PN  TF+ LI G C       A  V+  M     +PN  T++ L++ 
Sbjct: 223 LKVKSLMGENGVQPNVVTFNTLINGFCKERKRHEANRVFNEMKVXHVAPNVVTYNTLLNG 282

Query: 178 FCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQLALMLCSEMEARRLL 5
           +    D        R+M+   +  D   ++ +  GLC+ G+ + A     E++   L+
Sbjct: 283 YGQVGD--------REMVRNGVKADILTINALILGLCKDGKTKKAAGFVRELDKENLV 332



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 1/173 (0%)
 Frame = -2

Query: 562 FSEMKVANVAPNTVTSNTLINGYGQVGDTEMGIGLFEEMGRNQ-VKADILTYNALILGLC 386
           ++ MK    +P   + N  ++    +   ++ +  + EM R   V  ++ T N  I   C
Sbjct: 120 YTLMKEHGFSPTVESCNAFMSSLLHLRRADIALAFYREMRRRSCVSPNVYTLNMAIRAYC 179

Query: 385 KDGKTKKAAYVVKELVDKEKLAPNASTFSALITGQCVRNNAERAFLVYRTMIRSGYSPNE 206
             G+ +K   +  +++    L+PN  +F+ LI+G C +     A  V   M  +G  PN 
Sbjct: 180 MLGEVQKGFEMSXKMMGMV-LSPNVVSFNTLISGYCNKGLFGLALKVKSLMGENGVQPNV 238

Query: 205 NTFHMLISAFCMNEDFDGAVQVLRDMLDRFMTPDSSVLSDVYSGLCRCGRKQL 47
            TF+ LI+ FC       A +V  +M    + P+    + + +G  + G +++
Sbjct: 239 VTFNTLINGFCKERKRHEANRVFNEMKVXHVAPNVVTYNTLLNGYGQVGDREM 291