BLASTX nr result

ID: Glycyrrhiza24_contig00022432 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00022432
         (262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    96   4e-18
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    91   8e-17
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    88   6e-16
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]              87   1e-15
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]              87   1e-15

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 41/83 (49%), Positives = 55/83 (66%)
 Frame = -1

Query: 256  SIPNYVM*TSKLPASICDDIERMCRDFIWGSTPEARCNHLISWETICSPKDEGGLGFRSL 77
            SIP Y M ++KLP S CDDI+R  R F+WG     R  HL++WE I   K EGGLG RS+
Sbjct: 805  SIPYYTMQSTKLPRSTCDDIDRKSRSFLWGEQEGKRRVHLVAWENISKSKKEGGLGIRSM 864

Query: 76   RMVNNSYMMKLGWELMVNREALW 8
            R  N+++++KLGW L+    +LW
Sbjct: 865  RQANSAFLVKLGWRLLAEPSSLW 887


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 40/87 (45%), Positives = 57/87 (65%)
 Frame = -1

Query: 262 IMSIPNYVM*TSKLPASICDDIERMCRDFIWGSTPEARCNHLISWETICSPKDEGGLGFR 83
           + SIP +VM    LP S  D ++R  R F+WGST E +  HL+SW  IC PK EGG+G R
Sbjct: 660 LSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLR 719

Query: 82  SLRMVNNSYMMKLGWELMVNREALWVQ 2
           S R +N + + K+GW L+ ++E+LW +
Sbjct: 720 SARDMNKALVAKVGWRLLQDKESLWAR 746


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 36/87 (41%), Positives = 61/87 (70%)
 Frame = -1

Query: 262 IMSIPNYVM*TSKLPASICDDIERMCRDFIWGSTPEARCNHLISWETICSPKDEGGLGFR 83
           +MSIP + M +  LPAS+ + ++++ R+F+WGST E R  HL+SW+ +C PK  GGLG R
Sbjct: 595 LMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLR 654

Query: 82  SLRMVNNSYMMKLGWELMVNREALWVQ 2
           + + +N + + K+GW L+ ++ +LW +
Sbjct: 655 ASKDMNRALLAKVGWRLLNDKVSLWAR 681


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 33/87 (37%), Positives = 54/87 (62%)
 Frame = -1

Query: 262  IMSIPNYVM*TSKLPASICDDIERMCRDFIWGSTPEARCNHLISWETICSPKDEGGLGFR 83
            + ++P Y M    LP S C++I++ CR+F+WG     R  H ++W  IC P++EGGLG R
Sbjct: 1333 LATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLR 1392

Query: 82   SLRMVNNSYMMKLGWELMVNREALWVQ 2
              R  N +++ K+ W++  N + LWV+
Sbjct: 1393 MARDFNRAFLTKMAWQIFSNIDKLWVK 1419


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 33/87 (37%), Positives = 54/87 (62%)
 Frame = -1

Query: 262  IMSIPNYVM*TSKLPASICDDIERMCRDFIWGSTPEARCNHLISWETICSPKDEGGLGFR 83
            + ++P Y M    LP S C++I++ CR+F+WG     R  H ++W  IC P++EGGLG R
Sbjct: 801  LATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLR 860

Query: 82   SLRMVNNSYMMKLGWELMVNREALWVQ 2
              R  N +++ K+ W++  N + LWV+
Sbjct: 861  MARDFNRAFLTKMAWQIFSNIDKLWVK 887


Top