BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00022196
         (707 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_084809.1| photosystem I assembly protein Ycf4 [Lotus japo...   167   1e-39
ref|XP_003606016.1| Apocytochrome F [Medicago truncatula] gi|355...   167   3e-39
ref|XP_003605600.1| Photosystem I assembly protein ycf4 [Medicag...   167   3e-39
gb|ADE42521.1| photosystem I assembly protein Ycf4 [Vicia faba]       160   3e-37
ref|YP_514863.1| photosystem I assembly protein Ycf4 [Solanum ly...   134   2e-29

>ref|NP_084809.1| photosystem I assembly protein Ycf4 [Lotus japonicus]
           gi|18202723|sp|Q9BBR9.1|YCF4_LOTJA RecName:
           Full=Photosystem I assembly protein Ycf4
           gi|13358990|dbj|BAB33207.1| hypothetical protein [Lotus
           japonicus]
          Length = 200

 Score =  167 bits (424), Expect = 1e-39
 Identities = 82/139 (58%), Positives = 92/139 (66%)
 Frame = +1

Query: 289 MTWESEHVWRSEDAWIDIVTGSRKPSDFFWAXXXXXXXXXXXXXXXXXYYGRNLLSFISS 468
           MTW SE  W+SE+  +D VTG R P DFFWA                 Y  +N LSFISS
Sbjct: 1   MTWISEDTWQSEEVRVDFVTGCRNPRDFFWAFITLLGSVGFLLVAASSYLHKNFLSFISS 60

Query: 469 EFEPELVPFLPQGATMTFYGTAGXXXXXXXXXXIFWNVGSGYDFFDKKNKMVCFFRYGFP 648
           EF+ EL+ FLPQGAT+T YGTAG          IFWNVGSGYD FDKK  +VC FRYGFP
Sbjct: 61  EFDSELIRFLPQGATITVYGTAGLFVSLFLWLTIFWNVGSGYDLFDKKRGIVCIFRYGFP 120

Query: 649 GKNRRIFIRVRMDDIQSLI 705
           GKNRRIFIRV ++DIQSLI
Sbjct: 121 GKNRRIFIRVLINDIQSLI 139


>ref|XP_003606016.1| Apocytochrome F [Medicago truncatula] gi|355507071|gb|AES88213.1|
           Apocytochrome F [Medicago truncatula]
          Length = 751

 Score =  167 bits (422), Expect = 3e-39
 Identities = 84/140 (60%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
 Frame = +1

Query: 289 MTWESE-HVWRSEDAWIDIVTGSRKPSDFFWAXXXXXXXXXXXXXXXXXYYGRNLLSFIS 465
           ++W SE H  RS+DAW+DIV GSRKP +FFWA                 YYGR+  S IS
Sbjct: 27  ISWGSEKHGCRSQDAWLDIVPGSRKPINFFWASFTLLGSLGVLYLSVSSYYGRHFFSLIS 86

Query: 466 SEFEPELVPFLPQGATMTFYGTAGXXXXXXXXXXIFWNVGSGYDFFDKKNKMVCFFRYGF 645
           SEF   +VPFLPQG T+TFYG AG          IFWNVGSGY+FFDKK +MVCFFRYGF
Sbjct: 87  SEF---VVPFLPQGVTLTFYGIAGLFLSLHWWLLIFWNVGSGYNFFDKKKRMVCFFRYGF 143

Query: 646 PGKNRRIFIRVRMDDIQSLI 705
           PG  RRIF+RVRM+DIQSLI
Sbjct: 144 PGTYRRIFLRVRMEDIQSLI 163


>ref|XP_003605600.1| Photosystem I assembly protein ycf4 [Medicago truncatula]
           gi|355506655|gb|AES87797.1| Photosystem I assembly
           protein ycf4 [Medicago truncatula]
          Length = 224

 Score =  167 bits (422), Expect = 3e-39
 Identities = 84/140 (60%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
 Frame = +1

Query: 289 MTWESE-HVWRSEDAWIDIVTGSRKPSDFFWAXXXXXXXXXXXXXXXXXYYGRNLLSFIS 465
           ++W SE H  RS+DAW+DIV GSRKP +FFWA                 YYGR+  S IS
Sbjct: 27  ISWGSEKHGCRSQDAWLDIVPGSRKPINFFWASFTLLGSLGVLYLSVSSYYGRHFFSLIS 86

Query: 466 SEFEPELVPFLPQGATMTFYGTAGXXXXXXXXXXIFWNVGSGYDFFDKKNKMVCFFRYGF 645
           SEF   +VPFLPQG T+TFYG AG          IFWNVGSGY+FFDKK +MVCFFRYGF
Sbjct: 87  SEF---VVPFLPQGVTLTFYGIAGLFLSLHWWLLIFWNVGSGYNFFDKKKRMVCFFRYGF 143

Query: 646 PGKNRRIFIRVRMDDIQSLI 705
           PG  RRIF+RVRM+DIQSLI
Sbjct: 144 PGTYRRIFLRVRMEDIQSLI 163


>gb|ADE42521.1| photosystem I assembly protein Ycf4 [Vicia faba]
          Length = 219

 Score =  160 bits (404), Expect = 3e-37
 Identities = 81/140 (57%), Positives = 95/140 (67%), Gaps = 1/140 (0%)
 Frame = +1

Query: 289 MTWESEHVW-RSEDAWIDIVTGSRKPSDFFWAXXXXXXXXXXXXXXXXXYYGRNLLSFIS 465
           ++W SE +  RS+DAW+DIV GSRK  + FWA                 YYGR+  SFIS
Sbjct: 27  ISWGSEKLGCRSQDAWLDIVPGSRKIINLFWASFTLLGSLGVLYISVSSYYGRDFFSFIS 86

Query: 466 SEFEPELVPFLPQGATMTFYGTAGXXXXXXXXXXIFWNVGSGYDFFDKKNKMVCFFRYGF 645
           SEF   ++PFL QG T+TFYG AG          IFWNVGSGY+FFDKKN+MVCFFRYGF
Sbjct: 87  SEF---VIPFLTQGVTLTFYGIAGLFLSLHWWLLIFWNVGSGYNFFDKKNRMVCFFRYGF 143

Query: 646 PGKNRRIFIRVRMDDIQSLI 705
           PG  RRIF+RVRM+DIQSLI
Sbjct: 144 PGTYRRIFLRVRMEDIQSLI 163


>ref|YP_514863.1| photosystem I assembly protein Ycf4 [Solanum lycopersicum]
           gi|91208999|ref|YP_538859.1| photosystem I assembly
           protein Ycf4 [Solanum bulbocastanum]
           gi|108773141|ref|YP_635650.1| photosystem I assembly
           protein Ycf4 [Solanum tuberosum]
           gi|122201779|sp|Q2MI89.1|YCF4_SOLLC RecName:
           Full=Photosystem I assembly protein Ycf4
           gi|122201821|sp|Q2MIH6.1|YCF4_SOLBU RecName:
           Full=Photosystem I assembly protein Ycf4
           gi|122209887|sp|Q2VEG6.1|YCF4_SOLTU RecName:
           Full=Photosystem I assembly protein Ycf4
           gi|82754638|gb|ABB90052.1| photosystem I assembly
           protein Yc4 [Solanum tuberosum]
           gi|84371906|gb|ABC56224.1| photosystem I assembly
           protein ycf4 [Solanum bulbocastanum]
           gi|84371994|gb|ABC56311.1| photosystem I assembly
           protein ycf4 [Solanum lycopersicum]
           gi|88656815|gb|ABD47068.1| photosystem I assembly
           protein ycf4 [Solanum tuberosum]
           gi|89241682|emb|CAJ32404.1| photosystem I assembly
           protein Ycf4 [Solanum lycopersicum]
           gi|329124593|gb|AEB72150.1| photosystem I assembly
           protein ycf4 (chloroplast) [Solanum tuberosum]
           gi|329124680|gb|AEB72236.1| photosystem I assembly
           protein ycf4 (chloroplast) [Solanum tuberosum]
          Length = 184

 Score =  134 bits (336), Expect = 2e-29
 Identities = 66/130 (50%), Positives = 80/130 (61%)
 Frame = +1

Query: 313 WRSEDAWIDIVTGSRKPSDFFWAXXXXXXXXXXXXXXXXXYYGRNLLSFISSEFEPELVP 492
           WRS+D WI+++TGSRK S+F WA                 Y GRNLLSF    F P+ + 
Sbjct: 3   WRSDDIWIELITGSRKISNFCWALILFLGSLGFLLVGTSSYLGRNLLSF----FPPQQII 58

Query: 493 FLPQGATMTFYGTAGXXXXXXXXXXIFWNVGSGYDFFDKKNKMVCFFRYGFPGKNRRIFI 672
           F PQG  M+FYG AG          I WNVGSGYD FD+K  +VC FR+GFPGKNRRIF+
Sbjct: 59  FFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFL 118

Query: 673 RVRMDDIQSL 702
           R  + DIQS+
Sbjct: 119 RFLIKDIQSV 128