BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00021758
         (986 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   108   2e-47
ref|XP_003612606.1| Replication protein A1-like protein [Medicag...   108   4e-45
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...   109   3e-44
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...   104   9e-32
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...   102   5e-30

>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score =  108 bits (269), Expect(2) = 2e-47
 Identities = 47/118 (39%), Positives = 64/118 (54%)
 Frame = -3

Query: 972  WRWIWQLPAPEMIKSLLWLEAHDSAPTMKTLSHRGISQSDICKRCNNTAETFVHSVRDCT 793
            W WIWQL APE  K L+WL  H++APT+  L HR ++ +  C RC    E+F+H VRDC 
Sbjct: 977  WSWIWQLTAPEKYKLLIWLACHNAAPTLSLLHHRKMAPAATCSRCGENDESFLHCVRDCK 1036

Query: 792  LPQQMWLSLGFRDPLFYAELPSLGWMHKGMKSHNPALFLAGVWTAWTDRNAMSIAQET 619
                +W  LGF    F++      W+           FLAG+W +W  RN M ++ ET
Sbjct: 1037 HSAAIWHKLGFVTAAFFSVSSVQDWIRNFSSGSRAITFLAGLWWSWRHRNLMCLSNET 1094



 Score =  108 bits (269), Expect(2) = 2e-47
 Identities = 62/170 (36%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
 Frame = -1

Query: 623  RQETWHPSGEAIAVLNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSVGVA-DSLKAEL 447
            R   W+       +LNVDGS  G   RAG GG+ R+  G ++ G+ G +  + D L AEL
Sbjct: 1127 RMVKWNQGNHQCHILNVDGSCLGTPIRAGFGGIFRNNVGGYLSGYSGFISESTDILLAEL 1186

Query: 446  AAIWQGLSLAWLCGARDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLRRPWNVKM 267
             A+ QGL +A   G  +L CY+DS + ++L+ +  S+ H YA +I   +DLL    N  +
Sbjct: 1187 TALHQGLIMAAEMGIEELACYSDSLLTINLITRTTSKYHTYAVLIQDIKDLL-SAHNFSV 1245

Query: 266  EHSLREGNSCADSLARMGAAQTADLVVLDRPPPEIGGQLLADAMRVRFQR 117
             H  REGN CAD LA++GA+   + +V      E+   +  DA+   F R
Sbjct: 1246 YHCFREGNQCADYLAKLGASSNEECLVHASACQELLVLIQMDAIGTLFPR 1295


>ref|XP_003612606.1| Replication protein A1-like protein [Medicago truncatula]
           gi|355513941|gb|AES95564.1| Replication protein A1-like
           protein [Medicago truncatula]
          Length = 708

 Score =  108 bits (270), Expect(2) = 4e-45
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
 Frame = -1

Query: 611 WHPSGEAIAVLNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSV-GVADSLKAELAAIW 435
           W+ +  +  +LNVD S  G+  RAG GG+LR+    ++ GF G +   ++ L AEL AI+
Sbjct: 173 WNNNNHSCVILNVDLSCLGSPTRAGYGGVLRNYASFYLSGFSGYIQNSSNILFAELYAIY 232

Query: 434 QGLSLAWLCGARDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLRRPWNVKMEHSL 255
           QGL LA   G  DL CY++S   +++L     + H YA +I   ++LL +  NV M H+L
Sbjct: 233 QGLLLAKNMGNSDLFCYSNSLHCINILNGPLMRFHVYAVLIQDIKELLEQG-NVTMNHTL 291

Query: 254 REGNSCADSLARMGAAQTADLVVLDRPPPEIGGQLLAD 141
           R+GN CAD LA++GA+  ++ +  + PP ++   L +D
Sbjct: 292 RKGNQCADFLAKLGASSNSEFLCYESPPTDLLNLLRSD 329



 Score =  100 bits (248), Expect(2) = 4e-45
 Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
 Frame = -3

Query: 972 WRWIWQLPAPEMIKSLLWLEAHDSAPTMKTLSHRGISQSDICKRCNNTAETFVHSVRDCT 793
           W WIW+L   E IK +LWL  H+S  T+  L+H  IS S +C RC    ETF+H VRDC 
Sbjct: 19  WIWIWKLKLLEKIKFILWLACHNSVHTISLLNHGNISHSTVCNRCGIHNETFLHCVRDCI 78

Query: 792 LPQQMWLSLGFRDP-LFYAELPSLGWMHKGMKSHNPALFLAGVWTAWTDRNAMSIAQETR 616
             + +W   GF  P  F++    + W+  G+       F + +W+ W +RN M +  E  
Sbjct: 79  HSKPLWHQSGFTHPDFFFSNEDIIDWIKNGVMGSGSFSFASTIWSTWRNRNMMCLGNENW 138

Query: 615 NLASL 601
           + A L
Sbjct: 139 SNAQL 143


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score =  109 bits (273), Expect(2) = 3e-44
 Identities = 64/171 (37%), Positives = 98/171 (57%), Gaps = 1/171 (0%)
 Frame = -1

Query: 623  RQETWHPSGEAIAVLNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSV-GVADSLKAEL 447
            R   W+ S     +LNVDGS  G+  RAG GGL+R+  G ++ GF G +   +D L AEL
Sbjct: 700  RYVKWNNSNFNCTILNVDGSCIGSPIRAGFGGLIRNSVGFYLSGFLGFLPSSSDILLAEL 759

Query: 446  AAIWQGLSLAWLCGARDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLRRPWNVKM 267
             AI+ G++ A   G  D+  Y+DS ++++L+   +S+ H +AA+I   +D L    N  +
Sbjct: 760  TAIYDGINTAIDMGITDMAVYSDSLLSINLITTTSSKFHIHAALIQDIRDKLSLR-NFSL 818

Query: 266  EHSLREGNSCADSLARMGAAQTADLVVLDRPPPEIGGQLLADAMRVRFQRA 114
             H+LREGN  AD LA++GA    ++++   PP E+   L  DA    F R+
Sbjct: 819  NHTLREGNQSADYLAKLGAMSDVNVLIHQSPPDELCPLLKNDAAGTLFLRS 869



 Score = 96.3 bits (238), Expect(2) = 3e-44
 Identities = 46/124 (37%), Positives = 62/124 (50%)
 Frame = -3

Query: 972 WRWIWQLPAPEMIKSLLWLEAHDSAPTMKTLSHRGISQSDICKRCNNTAETFVHSVRDCT 793
           W WI +    E  K L+WL  HDS PT   L HR I  S  C RC  + E+  H +RDC 
Sbjct: 551 WSWILKKKISEKYKFLIWLACHDSLPTAALLHHRQIIASATCARCGVSDESVFHCIRDCP 610

Query: 792 LPQQMWLSLGFRDPLFYAELPSLGWMHKGMKSHNPALFLAGVWTAWTDRNAMSIAQETRN 613
             + +W  +GF +P F+A      W   G+      LF AG+W  W  RNA  +++E+  
Sbjct: 611 FSKIIWHHIGFSEPYFFAVTDIEIWCKSGLIGSKAILFAAGLWWIWRSRNARCMSEESML 670

Query: 612 LASL 601
           L  L
Sbjct: 671 LQRL 674


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 676

 Score =  104 bits (259), Expect(2) = 9e-32
 Identities = 55/173 (31%), Positives = 84/173 (48%)
 Frame = -1

Query: 635  LLLKRQETWHPSGEAIAVLNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSVGVADSLK 456
            +L++R   W    E    +N DG+S GN G+A  GG++R   G W+ GF  ++GV  +  
Sbjct: 500  VLVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPL 559

Query: 455  AELAAIWQGLSLAWLCGARDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLRRPWN 276
            AEL  ++ GL +AW  G R +    DS++ +  L+     SH  A ++      + + W 
Sbjct: 560  AELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWI 619

Query: 275  VKMEHSLREGNSCADSLARMGAAQTADLVVLDRPPPEIGGQLLADAMRVRFQR 117
            V++ H  RE N  AD LA          ++LD  P  +   LL D M   F R
Sbjct: 620  VRITHVYREANRLADGLANYAFTLPFGFLLLDSCPEHVSSILLEDVMGTSFPR 672



 Score = 59.7 bits (143), Expect(2) = 9e-32
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
 Frame = -3

Query: 963 IWQLPAPEMIKSLLWLEAHDSAPTMKTLSHRGISQSDICKRCNNTAETFVHSVRDCTLPQ 784
           +W++  PE  +  LWL  +    T      R ++ SD+C  C   +E+ +H +RDC    
Sbjct: 347 VWRVMVPERARIFLWLVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMM 406

Query: 783 QMWLS-LGFRDPLFYAELPSLGWMHKGMKSHN-------PALFLAGVWTAWTDRNAMSIA 628
            +W+  +   +   + E   L WM+  +K  +       P LF   VW  W  R      
Sbjct: 407 GIWMRVVPVMEQRRFFETSLLEWMYGNLKERSDSERRSWPTLFALTVWWGWKWRCGYVFG 466

Query: 627 QETR 616
           +++R
Sbjct: 467 EDSR 470


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score =  102 bits (254), Expect(2) = 5e-30
 Identities = 60/181 (33%), Positives = 89/181 (49%)
 Frame = -1

Query: 647 ETQCLLLKRQETWHPSGEAIAVLNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSVGVA 468
           E +   ++R  +W    +    LN DG+S GN G A  GG+LR  +G WI GF  ++GV 
Sbjct: 141 EVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVC 200

Query: 467 DSLKAELAAIWQGLSLAWLCGARDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLR 288
            +  AEL  ++ GL +AW  GAR +    DS M +  L    + SH  + ++    D L 
Sbjct: 201 SAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLLRLCYDFLS 260

Query: 287 RPWNVKMEHSLREGNSCADSLARMGAAQTADLVVLDRPPPEIGGQLLADAMRVRFQRAAD 108
           + W V++ H  RE N  AD LA    + +  L +L+  P  +   LL D   V + R   
Sbjct: 261 KGWIVRISHVYREANRLADGLANYAFSLSLGLHLLESRPDVVSSILLDDVAGVSYPRHVQ 320

Query: 107 V 105
           V
Sbjct: 321 V 321



 Score = 55.8 bits (133), Expect(2) = 5e-30
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
 Frame = -3

Query: 948 APEMIKSLLWLEAHDSAPTMKTLSHRGISQSDICKRCNNTAETFVHSVRDCTLPQQMWLS 769
           APE ++  LWL       T      R +S + +C+ C    ET +H +RDC     +W  
Sbjct: 2   APERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSR 61

Query: 768 LGFRDPL---FYAELPSLGWMHKGMKSHN--PALFLAGVWTAW 655
           L  RD +   F A L  L W++K ++     P +F+  VW  W
Sbjct: 62  LVPRDQIRQFFTASL--LEWIYKNLRERGSWPTVFVMAVWWGW 102