BLASTX nr result
ID: Glycyrrhiza24_contig00021317
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00021317
(370 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containi... 156 1e-36
ref|XP_003609638.1| Pentatricopeptide repeat-containing protein ... 156 1e-36
emb|CBI26082.3| unnamed protein product [Vitis vinifera] 140 8e-32
ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containi... 140 8e-32
ref|XP_002330363.1| predicted protein [Populus trichocarpa] gi|2... 131 5e-29
>ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Glycine max]
Length = 603
Score = 156 bits (395), Expect = 1e-36
Identities = 79/122 (64%), Positives = 93/122 (76%)
Frame = +1
Query: 1 YSQNAQGHLALQLFREFNHFGLDKPNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHT 180
YSQNAQGH ALQLF+EFNH LDKPNHFML SA+ ACASLG LG+GKITHGVVIRLGH
Sbjct: 201 YSQNAQGHHALQLFKEFNHSRLDKPNHFMLCSAVSACASLGSLGSGKITHGVVIRLGHEA 260
Query: 181 NDVIATALVDMYAKCGCIGEALDVFWSIRDKDVASWNSVIGGLAFHGHAEESLGLFREMQ 360
+DVIA+ALVDMYAKCGC+ + +F I++ V + S+I G A +G SL LF+EM
Sbjct: 261 SDVIASALVDMYAKCGCVNYSAKIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQEMV 320
Query: 361 QR 366
R
Sbjct: 321 VR 322
Score = 66.6 bits (161), Expect = 2e-09
Identities = 40/118 (33%), Positives = 62/118 (52%)
Frame = +1
Query: 1 YSQNAQGHLALQLFREFNHFGLDKPNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHT 180
Y Q ++AL LF + L PN F ++ I AC+ L L G+ H +V G +
Sbjct: 100 YVSQGQPNMALCLFHQMQGT-LVLPNEFTFATLINACSILANLEIGRRIHALVEVSGLGS 158
Query: 181 NDVIATALVDMYAKCGCIGEALDVFWSIRDKDVASWNSVIGGLAFHGHAEESLGLFRE 354
N V ++L+DMY KC + EA +F S+ ++V SW S+I + + +L LF+E
Sbjct: 159 NLVACSSLIDMYGKCNHVDEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKE 216
>ref|XP_003609638.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510693|gb|AES91835.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 589
Score = 156 bits (395), Expect = 1e-36
Identities = 79/122 (64%), Positives = 93/122 (76%)
Frame = +1
Query: 1 YSQNAQGHLALQLFREFNHFGLDKPNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHT 180
YSQN QGHLALQLFREFNH ++KPNHFML SA+ ACASLGRLG+GKITHGVVIRLGH
Sbjct: 200 YSQNGQGHLALQLFREFNHIRMNKPNHFMLCSAVTACASLGRLGSGKITHGVVIRLGHDA 259
Query: 181 NDVIATALVDMYAKCGCIGEALDVFWSIRDKDVASWNSVIGGLAFHGHAEESLGLFREMQ 360
+DV+A+ALVDMYAKCGC+ + VF I + V + S+I G A +G SL LF+EM
Sbjct: 260 SDVVASALVDMYAKCGCVTYSDKVFRRIVNPSVVPYTSMIVGAAKYGLGTLSLRLFQEMV 319
Query: 361 QR 366
R
Sbjct: 320 DR 321
Score = 71.6 bits (174), Expect = 6e-11
Identities = 41/118 (34%), Positives = 65/118 (55%)
Frame = +1
Query: 1 YSQNAQGHLALQLFREFNHFGLDKPNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHT 180
Y + Q ++AL LF + L PN F S+ I AC+ L L G+ H +V G+ +
Sbjct: 99 YVRQGQPNIALCLFHQMQGT-LVMPNEFTFSTLINACSILANLETGRRIHALVEVFGYRS 157
Query: 181 NDVIATALVDMYAKCGCIGEALDVFWSIRDKDVASWNSVIGGLAFHGHAEESLGLFRE 354
+ V+ ++L+DMY KC + EA +F + ++V SW S+I + +G +L LFRE
Sbjct: 158 DLVVCSSLIDMYGKCNRVDEAQMIFDFMWVRNVVSWTSMITTYSQNGQGHLALQLFRE 215
>emb|CBI26082.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 140 bits (354), Expect = 8e-32
Identities = 72/122 (59%), Positives = 85/122 (69%)
Frame = +1
Query: 1 YSQNAQGHLALQLFREFNHFGLDKPNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHT 180
Y QNA G ALQLFREFN L PNHFML+S I ACASLGRL +GK+ H VIR GH +
Sbjct: 204 YGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHES 263
Query: 181 NDVIATALVDMYAKCGCIGEALDVFWSIRDKDVASWNSVIGGLAFHGHAEESLGLFREMQ 360
NDV+A+ALVDMYAKCGCIG + VF I D V + S+I G A +G + SL +F+EM
Sbjct: 264 NDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEML 323
Query: 361 QR 366
R
Sbjct: 324 DR 325
Score = 61.6 bits (148), Expect = 6e-08
Identities = 33/94 (35%), Positives = 50/94 (53%)
Frame = +1
Query: 73 PNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHTNDVIATALVDMYAKCGCIGEALDV 252
PN F ++ + AC+ L L G+ H V G N V+ ++L+DMY KC + +A V
Sbjct: 126 PNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRV 185
Query: 253 FWSIRDKDVASWNSVIGGLAFHGHAEESLGLFRE 354
F + ++V SW S+I + E +L LFRE
Sbjct: 186 FDGMDYRNVVSWTSMITAYGQNALGECALQLFRE 219
>ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Vitis vinifera]
Length = 606
Score = 140 bits (354), Expect = 8e-32
Identities = 72/122 (59%), Positives = 85/122 (69%)
Frame = +1
Query: 1 YSQNAQGHLALQLFREFNHFGLDKPNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHT 180
Y QNA G ALQLFREFN L PNHFML+S I ACASLGRL +GK+ H VIR GH +
Sbjct: 204 YGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHES 263
Query: 181 NDVIATALVDMYAKCGCIGEALDVFWSIRDKDVASWNSVIGGLAFHGHAEESLGLFREMQ 360
NDV+A+ALVDMYAKCGCIG + VF I D V + S+I G A +G + SL +F+EM
Sbjct: 264 NDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEML 323
Query: 361 QR 366
R
Sbjct: 324 DR 325
Score = 61.6 bits (148), Expect = 6e-08
Identities = 33/94 (35%), Positives = 50/94 (53%)
Frame = +1
Query: 73 PNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHTNDVIATALVDMYAKCGCIGEALDV 252
PN F ++ + AC+ L L G+ H V G N V+ ++L+DMY KC + +A V
Sbjct: 126 PNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRV 185
Query: 253 FWSIRDKDVASWNSVIGGLAFHGHAEESLGLFRE 354
F + ++V SW S+I + E +L LFRE
Sbjct: 186 FDGMDYRNVVSWTSMITAYGQNALGECALQLFRE 219
>ref|XP_002330363.1| predicted protein [Populus trichocarpa] gi|222871567|gb|EEF08698.1|
predicted protein [Populus trichocarpa]
Length = 584
Score = 131 bits (330), Expect = 5e-29
Identities = 66/122 (54%), Positives = 88/122 (72%)
Frame = +1
Query: 1 YSQNAQGHLALQLFREFNHFGLDKPNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHT 180
Y+QN +G+ AL++FREF+ + +++PNHFML+S I ACASLGRL +GK+THG VIR G+
Sbjct: 183 YAQNGKGYEALEVFREFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYEL 242
Query: 181 NDVIATALVDMYAKCGCIGEALDVFWSIRDKDVASWNSVIGGLAFHGHAEESLGLFREMQ 360
NDV+A+ALVDMYAKCG + VF IR+ V + S+I G A +G + SL LF EM
Sbjct: 243 NDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMT 302
Query: 361 QR 366
R
Sbjct: 303 DR 304
Score = 72.4 bits (176), Expect = 4e-11
Identities = 39/94 (41%), Positives = 56/94 (59%)
Frame = +1
Query: 73 PNHFMLSSAIGACASLGRLGAGKITHGVVIRLGHHTNDVIATALVDMYAKCGCIGEALDV 252
PN F L++ I +C+ L L GK+ H V LG N V+ ++LVDMY KC + A V
Sbjct: 105 PNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMV 164
Query: 253 FWSIRDKDVASWNSVIGGLAFHGHAEESLGLFRE 354
F S+ ++V SW ++I G A +G E+L +FRE
Sbjct: 165 FDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFRE 198