BLASTX nr result
ID: Glycyrrhiza24_contig00021073
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00021073
(1175 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABE80156.1| Ribonuclease H [Medicago truncatula] 67 2e-25
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 52 1e-19
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 72 2e-14
gb|ABD28646.1| Ribonuclease H [Medicago truncatula] 47 3e-10
ref|XP_003613802.1| S-like ribonuclease [Medicago truncatula] gi... 39 6e-10
>gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
Length = 438
Score = 66.6 bits (161), Expect(4) = 2e-25
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Frame = -2
Query: 1153 YTIVLEHIKNQINSIQFSLHEQVFDGYIWD-NTDRIYSARSGYSWLLHQNGNFTS----- 992
YT + ++N IN+ ++ + D IW N + YS +SG+ WLL T
Sbjct: 59 YTNLPLAVENHINNFHIHFNDNIEDALIWSQNKNGTYSTKSGFHWLLTFRVPATDIIPHP 118
Query: 991 RWNWIWKLKAPENIKTHIWLEAHHSNPTLQVLQAAA*KSGNNNLCTR*NIAEEDFLHAVF 812
W+WIW L+ PE K IWL + PTL +L + C R +E FLH V
Sbjct: 119 SWSWIWNLQVPEKYKFLIWLACQNVVPTLSLLHRR--NIAPSPTCARCGEEDETFLHCVR 176
Query: 811 EIVLCLTFSGSCW 773
+ FS S W
Sbjct: 177 D----CHFSRSIW 185
Score = 46.2 bits (108), Expect(4) = 2e-25
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = -2
Query: 190 VQVNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 32
+ ++H+LREGNQ A+F AK GA + H+++ + P + +L AD +G F R
Sbjct: 385 ITLHHTLREGNQCADFFAKLGANSDVHLVVHQSPPADLLPLLRADAIGTVFIR 437
Score = 39.3 bits (90), Expect(4) = 2e-25
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = -1
Query: 458 RAGVGGLLRIEDGDWVAGFAGFM-GDTSIL*AELVAIYYGLDLA*TXXXXXXRSVTDSMV 282
R G GG+LR G +++GF+GF+ T IL AEL AI+ L + +DS++
Sbjct: 295 RTGYGGILRNSAGLFISGFSGFIPNSTDILQAELTAIHQSLHMVIDSNMNDVMCYSDSLL 354
Query: 281 AFHXXXXXXXXXXXXXXXXXSIKELL 204
A + +IK+LL
Sbjct: 355 AVNLIMNDTPRYHTYAVLIQNIKDLL 380
Score = 30.8 bits (68), Expect(4) = 2e-25
Identities = 19/64 (29%), Positives = 24/64 (37%)
Frame = -3
Query: 663 AWTARNKACVAKEEVDKFRVVREAQWLVDTIHHCFYYGLQAPRVKRWVSLNPYGDSSHML 484
AW RN C+ E + FR+ I F R+V N H+L
Sbjct: 224 AWRHRNLMCLNNETMSLFRLCNNIVSAATYIKSAFDSEENVNHSDRFVKWNNRNHHDHIL 283
Query: 483 NVDG 472
NVDG
Sbjct: 284 NVDG 287
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 51.6 bits (122), Expect(4) = 1e-19
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = -2
Query: 994 SRWNWIWKLKAPENIKTHIWLEAHHSNPTLQVLQAAA*KSGNNNLCTR*NIAEEDFLHAV 815
S W+WIW+L APE K IWL H++ PTL +L K C+R +E FLH V
Sbjct: 975 SVWSWIWQLTAPEKYKLLIWLACHNAAPTLSLLHHR--KMAPAATCSRCGENDESFLHCV 1032
Score = 42.7 bits (99), Expect(4) = 1e-19
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = -2
Query: 184 VNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 32
V H REGNQ A++LAK GA N+ ++ + V++ D +G FPR
Sbjct: 1245 VYHCFREGNQCADYLAKLGASSNEECLVHASACQELLVLIQMDAIGTLFPR 1295
Score = 40.4 bits (93), Expect(4) = 1e-19
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = -1
Query: 458 RAGVGGLLRIEDGDWVAGFAGFMGD-TSIL*AELVAIYYGLDLA*TXXXXXXRSVTDSMV 282
RAG GG+ R G +++G++GF+ + T IL AEL A++ GL +A +DS++
Sbjct: 1153 RAGFGGIFRNNVGGYLSGYSGFISESTDILLAELTALHQGLIMAAEMGIEELACYSDSLL 1212
Query: 281 AFHXXXXXXXXXXXXXXXXXSIKELL 204
+ IK+LL
Sbjct: 1213 TINLITRTTSKYHTYAVLIQDIKDLL 1238
Score = 28.1 bits (61), Expect(4) = 1e-19
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Frame = -3
Query: 714 NFREGPSLVLSRFVVTVAWTARNKACVAKEEVDKFRVVREAQWLVDTIHHCFYYG-LQAP 538
NF G + + +W RN C++ E R+ ++ I F + P
Sbjct: 1064 NFSSGSRAITFLAGLWWSWRHRNLMCLSNETWPLTRISFRINDSINAIRSAFVKSNVIQP 1123
Query: 537 RVKRWVSLNPYGDSSHMLNVDG 472
R V N H+LNVDG
Sbjct: 1124 DSARMVKWNQGNHQCHILNVDG 1145
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 44.7 bits (104), Expect(3) = 2e-14
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -2
Query: 184 VNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 32
+NH+LREGNQSA++LAK GA + +V+I + P + +L D G F R
Sbjct: 818 LNHTLREGNQSADYLAKLGAMSDVNVLIHQSPPDELCPLLKNDAAGTLFLR 868
Score = 41.6 bits (96), Expect(3) = 2e-14
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = -1
Query: 458 RAGVGGLLRIEDGDWVAGFAGFMGDTS-IL*AELVAIYYGLDLA*TXXXXXXRSVTDSMV 282
RAG GGL+R G +++GF GF+ +S IL AEL AIY G++ A +DS++
Sbjct: 726 RAGFGGLIRNSVGFYLSGFLGFLPSSSDILLAELTAIYDGINTAIDMGITDMAVYSDSLL 785
Query: 281 AFH 273
+ +
Sbjct: 786 SIN 788
Score = 39.3 bits (90), Expect(3) = 2e-14
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -3
Query: 660 WTARNKACVAKEEVDKFRVVREAQWLVDTIHHCFYYGLQAPRVKRWVSLNPYGDSSHMLN 481
W +RN C+++E + R+ + VD I+ CF+ L R+V N + +LN
Sbjct: 656 WRSRNARCMSEESMLLQRLAANITYFVDDINSCFFQPLPVMVSDRYVKWNNSNFNCTILN 715
Query: 480 VDG 472
VDG
Sbjct: 716 VDG 718
Score = 72.4 bits (176), Expect = 2e-10
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Frame = -2
Query: 1156 LYTIVLEHIKNQINSIQFSLHEQVFDGYIWD-NTDRIYSARSGYSWLLHQNG--NFTSRW 986
LYT + + + + IN+I F ++ + D +IW N + YSA+SGY WLL +G N T W
Sbjct: 492 LYTPLPQAVTDCINTINFRFNDAIEDVFIWPHNKNGTYSAKSGYQWLLSLSGNDNNTHSW 551
Query: 985 NWIWKLKAPENIKTHIWLEAHHSNPTLQVLQAAA*KSGNNNLCTR*NIAEEDFLHAV 815
+WI K K E K IWL H S PT +L + + C R +++E H +
Sbjct: 552 SWILKKKISEKYKFLIWLACHDSLPTAALLHHR--QIIASATCARCGVSDESVFHCI 606
>gb|ABD28646.1| Ribonuclease H [Medicago truncatula]
Length = 208
Score = 47.0 bits (110), Expect(3) = 3e-10
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = -2
Query: 184 VNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 32
+ H LREGNQ A+F+AK+GA N I P + V+L D +G FPR
Sbjct: 157 IQHCLREGNQCADFMAKFGASSNNVCFIHPSPPQDLHVLLRNDAIGTCFPR 207
Score = 40.0 bits (92), Expect(3) = 3e-10
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = -1
Query: 458 RAGVGGLLRIEDGDWVAGFAGFMGD-TSIL*AELVAIYYGLDLA*TXXXXXXRSVTDSMV 282
RAG GG++R G +++ F+GF+ D T IL AEL AI+ G +A +DS++
Sbjct: 65 RAGYGGIIRNSAGLYLSCFSGFIADSTDILLAELTAIHRGFSIASDMGVNEMACYSDSLL 124
Query: 281 AFHXXXXXXXXXXXXXXXXXSIKELL 204
+ + IK+LL
Sbjct: 125 SINLITGQASKYHAYAVLIQDIKDLL 150
Score = 24.3 bits (51), Expect(3) = 3e-10
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = -3
Query: 639 CVAKEEVDKFRVVREAQWLVDTIHHCFYYGLQAP--RVKRWVSLNPYGDSSHMLNVDGRK 466
C++ + R+ Q DTI F P R+ RW S N H+LNVDG
Sbjct: 3 CLSNDTWSLTRLSFYIQNSADTIKSSFQNSSATPHDRMVRWNSNNHL---CHILNVDGSC 59
Query: 465 DG 460
G
Sbjct: 60 SG 61
>ref|XP_003613802.1| S-like ribonuclease [Medicago truncatula]
gi|355515137|gb|AES96760.1| S-like ribonuclease
[Medicago truncatula]
Length = 552
Score = 39.3 bits (90), Expect(3) = 6e-10
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = -1
Query: 458 RAGVGGLLRIEDGDWVAGFAGFMGDTS-IL*AELVAIYYGLDLA*TXXXXXXRSVTDSM 285
RAG GLLR G +++GF+G++ ++S I EL AIY+GL LA +DSM
Sbjct: 409 RAGYDGLLRNHAGYYLSGFSGYIHNSSDIFYVELFAIYHGLLLAKEKNVVDLVCYSDSM 467
Score = 35.8 bits (81), Expect(3) = 6e-10
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -3
Query: 675 VVTVAWTARNKACVAKEEVDKFRVVREAQWLVDTIHHCFYYGLQAPRVKRWVSLNPYGDS 496
+V AW RN C++ R+V Q +++T +CF +R++ N S
Sbjct: 334 IVWWAWRHRNIMCLSHGNWSLNRLVFNIQGMIETFKNCFSVNRNGVIEERFIKWNNNNHS 393
Query: 495 SHMLNVDG 472
+LNVDG
Sbjct: 394 CVILNVDG 401
Score = 35.0 bits (79), Expect(3) = 6e-10
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -2
Query: 190 VQVNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 32
V + H+LRE NQ ANFLAK A + P ++ +L D G FPR
Sbjct: 499 VTIYHTLREENQYANFLAKLKASSDIVFCHHASPPEGLQSLLKIDAAGTIFPR 551