BLASTX nr result
ID: Glycyrrhiza24_contig00021054
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00021054
(856 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ... 510 e-142
ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|2... 440 e-121
emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera] 430 e-118
ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containi... 403 e-110
ref|XP_002515077.1| pentatricopeptide repeat-containing protein,... 397 e-108
>ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical
[Medicago truncatula] gi|355501623|gb|AES82826.1|
Pentatricopeptide repeat-containing protein [Medicago
truncatula]
Length = 451
Score = 510 bits (1314), Expect = e-142
Identities = 248/276 (89%), Positives = 258/276 (93%)
Frame = +2
Query: 2 RHGVFPNTKSYNIMMRAFCFNGDISIAYNLFNKMFKRDVVPDIESYRILMQALCRKSQVN 181
+HGVFP+TKSYNI+MRAFC NGDISIAY LFNKMFKRDVVPDI+SYRILMQALCRKSQVN
Sbjct: 175 KHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVN 234
Query: 182 GAVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVI 361
GAVDL EDMLNKGFVPDS TYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVI
Sbjct: 235 GAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVI 294
Query: 362 LGFCREGHAHDACKVIDDMHANGCLPNLVSYRTLVNSLCDMGMLDEANKYMEEMLSKGFS 541
LGFCREG AHDACKVIDDM ANGCLPNLVSYRTLVN LC +GMLDEA KY+EEMLSKGFS
Sbjct: 295 LGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEMLSKGFS 354
Query: 542 PHFAVIHSLVKGFCNVGRTEEACGVLTKSLEHGEAPHTDTWMIIVPLICEVEDAVKIGGV 721
PHFAVIH+LVKGFCNVGR EEACGVLTKSLEH EAPH DTWMIIVP ICEV+D VKI GV
Sbjct: 355 PHFAVIHALVKGFCNVGRIEEACGVLTKSLEHREAPHKDTWMIIVPQICEVDDGVKIDGV 414
Query: 722 SEEVLRIEIKGHTRIVDAGIGLENYLIGKIRAKSRQ 829
EEVL+IEIKG TRIVDAGIGLE+YLI KIRAKSRQ
Sbjct: 415 LEEVLKIEIKGDTRIVDAGIGLEDYLIRKIRAKSRQ 450
Score = 101 bits (252), Expect = 2e-19
Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 1/233 (0%)
Frame = +2
Query: 80 AYNLFNKMFKRDVVPDIESY-RILMQALCRKSQVNGAVDLLEDMLNKGFVPDSLTYTTLL 256
A N F M + ++ P + RIL + ++ + A DL +D G PD+ +Y L+
Sbjct: 130 ALNTFYIMLQFNIKPLTKHLNRILDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYNILM 189
Query: 257 NSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGHAHDACKVIDDMHANGCL 436
+ C + AY L +M + PDI Y ++ CR+ + A + +DM G +
Sbjct: 190 RAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFV 249
Query: 437 PNLVSYRTLVNSLCDMGMLDEANKYMEEMLSKGFSPHFAVIHSLVKGFCNVGRTEEACGV 616
P+ +Y TL+NSLC L EA K + M KG +P ++++ GFC GR +AC V
Sbjct: 250 PDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKV 309
Query: 617 LTKSLEHGEAPHTDTWMIIVPLICEVEDAVKIGGVSEEVLRIEIKGHTRIVDA 775
+ +G P+ ++ +V +C + + EE+L H ++ A
Sbjct: 310 IDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEMLSKGFSPHFAVIHA 362
>ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|222861674|gb|EEE99216.1|
predicted protein [Populus trichocarpa]
Length = 475
Score = 440 bits (1131), Expect = e-121
Identities = 202/273 (73%), Positives = 244/273 (89%)
Frame = +2
Query: 5 HGVFPNTKSYNIMMRAFCFNGDISIAYNLFNKMFKRDVVPDIESYRILMQALCRKSQVNG 184
+ VFPNTKSYNI++RAFC NG IS+AY+LFN+MFKRDV+PD+ESYRILMQALCRKSQVNG
Sbjct: 200 YDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNG 259
Query: 185 AVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVIL 364
AVDLLEDMLNKG+VPD+L+YTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI+HYNTVIL
Sbjct: 260 AVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVIL 319
Query: 365 GFCREGHAHDACKVIDDMHANGCLPNLVSYRTLVNSLCDMGMLDEANKYMEEMLSKGFSP 544
GFCREG A DACKV++DM +NGC+PNLVSYRTLV LCD GM DEA ++EEM+ KGFSP
Sbjct: 320 GFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSP 379
Query: 545 HFAVIHSLVKGFCNVGRTEEACGVLTKSLEHGEAPHTDTWMIIVPLICEVEDAVKIGGVS 724
HFAV ++L+KGFCNVG+ EEACGV+ + L+HGEAPHT+TW+++V ICEV+D +IG +
Sbjct: 380 HFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWVMMVSRICEVDDLQRIGEIL 439
Query: 725 EEVLRIEIKGHTRIVDAGIGLENYLIGKIRAKS 823
++V ++E+KG TRIV+AGIGLE YLI + + K+
Sbjct: 440 DKVKKVELKGDTRIVEAGIGLEEYLIKRTQQKA 472
Score = 99.0 bits (245), Expect = 1e-18
Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 1/205 (0%)
Frame = +2
Query: 80 AYNLFNKMFKRDVVPDIESYRILMQALC-RKSQVNGAVDLLEDMLNKGFVPDSLTYTTLL 256
A +F + K D P + +++ L ++ + A DL +D P++ +Y L+
Sbjct: 154 ALKIFYTILKFDCNPSPKHLNGILEILVSHQNYIKPAFDLFKDAHTYDVFPNTKSYNILI 213
Query: 257 NSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGHAHDACKVIDDMHANGCL 436
+ C ++ AY L +M + PD+ Y ++ CR+ + A +++DM G +
Sbjct: 214 RAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYV 273
Query: 437 PNLVSYRTLVNSLCDMGMLDEANKYMEEMLSKGFSPHFAVIHSLVKGFCNVGRTEEACGV 616
P+ +SY TL+NSLC L EA K + M KG +P ++++ GFC GR +AC V
Sbjct: 274 PDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKV 333
Query: 617 LTKSLEHGEAPHTDTWMIIVPLICE 691
L +G P+ ++ +V +C+
Sbjct: 334 LEDMESNGCMPNLVSYRTLVGGLCD 358
Score = 59.7 bits (143), Expect = 8e-07
Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 1/208 (0%)
Frame = +2
Query: 134 SYRILMQALCRKSQVNGAVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRM 313
SY IL+ L R + DLL D+ +K + ++ ++N +A K+ +
Sbjct: 102 SYLILILKLGRAKYFSFIDDLLTDLKSKNYPVTPTLFSYIINIYGEANLPDKALKIFYTI 161
Query: 314 KVKGCNPDIVHYNTVI-LGFCREGHAHDACKVIDDMHANGCLPNLVSYRTLVNSLCDMGM 490
CNP H N ++ + + + A + D H PN SY L+ + C G
Sbjct: 162 LKFDCNPSPKHLNGILEILVSHQNYIKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQ 221
Query: 491 LDEANKYMEEMLSKGFSPHFAVIHSLVKGFCNVGRTEEACGVLTKSLEHGEAPHTDTWMI 670
+ A +M + P L++ C + A +L L G P ++
Sbjct: 222 ISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTT 281
Query: 671 IVPLICEVEDAVKIGGVSEEVLRIEIKG 754
++ +C + K+ + + R+++KG
Sbjct: 282 LLNSLCRKK---KLREAYKLLCRMKVKG 306
>emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 430 bits (1106), Expect = e-118
Identities = 200/277 (72%), Positives = 239/277 (86%)
Frame = +2
Query: 2 RHGVFPNTKSYNIMMRAFCFNGDISIAYNLFNKMFKRDVVPDIESYRILMQALCRKSQVN 181
R+GV P+TKSYNI+M AFCFNGD+SIAY LFN+MFKRDV PD+ESYRILMQ LCRKSQVN
Sbjct: 146 RYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVN 205
Query: 182 GAVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVI 361
AVDLLEDMLNKG+VPD+L+YTTLLNSLCRKKKL+EAYKLLCRMKVKGCNPDIVHYNTVI
Sbjct: 206 RAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVI 265
Query: 362 LGFCREGHAHDACKVIDDMHANGCLPNLVSYRTLVNSLCDMGMLDEANKYMEEMLSKGFS 541
LGFCREG DACKV++DM +NGC PNL+SY TLV+ LCD G+ DEA Y+EEMLSKGFS
Sbjct: 266 LGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEMLSKGFS 325
Query: 542 PHFAVIHSLVKGFCNVGRTEEACGVLTKSLEHGEAPHTDTWMIIVPLICEVEDAVKIGGV 721
PHF+V H+L+ GFCNVG+ EEAC VL + L HGEA HT+TW+ I+P ICEV+ V++ +
Sbjct: 326 PHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWVAIIPRICEVDKLVRMENI 385
Query: 722 SEEVLRIEIKGHTRIVDAGIGLENYLIGKIRAKSRQS 832
+E L++EI +TR+V+AGIGLE Y+I K+R KSR++
Sbjct: 386 FDEXLKLEITPNTRLVEAGIGLEEYVIRKVRDKSRKA 422
Score = 102 bits (253), Expect = 1e-19
Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 1/205 (0%)
Frame = +2
Query: 80 AYNLFNKMFKRDVVPDIESYRILMQALC-RKSQVNGAVDLLEDMLNKGFVPDSLTYTTLL 256
A F+ M + P + L+Q L ++ + A DL + G PD+ +Y L+
Sbjct: 101 ALKTFHSMLQFHSKPLPKHLNXLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILM 160
Query: 257 NSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGHAHDACKVIDDMHANGCL 436
++ C L AY L +M + PD+ Y ++ G CR+ + A +++DM G +
Sbjct: 161 SAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYV 220
Query: 437 PNLVSYRTLVNSLCDMGMLDEANKYMEEMLSKGFSPHFAVIHSLVKGFCNVGRTEEACGV 616
P+ +SY TL+NSLC L EA K + M KG +P ++++ GFC GR +AC V
Sbjct: 221 PDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKV 280
Query: 617 LTKSLEHGEAPHTDTWMIIVPLICE 691
L +G +P+ ++ +V +C+
Sbjct: 281 LEDMPSNGCSPNLMSYGTLVSGLCD 305
>ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 403 bits (1036), Expect = e-110
Identities = 187/271 (69%), Positives = 227/271 (83%)
Frame = +2
Query: 5 HGVFPNTKSYNIMMRAFCFNGDISIAYNLFNKMFKRDVVPDIESYRILMQALCRKSQVNG 184
HGV PNTKSYNI++RAFC+NG+ISIAY LFNKMF+R+V+PD+E+YR LMQ LCRK+QVNG
Sbjct: 206 HGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNG 265
Query: 185 AVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVIL 364
AVDLLEDMLNKG++PD+L+Y TLLNSLCRKKKLREAYKLLCRMKVKGCNPDI HYNTVI+
Sbjct: 266 AVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDIAHYNTVIM 325
Query: 365 GFCREGHAHDACKVIDDMHANGCLPNLVSYRTLVNSLCDMGMLDEANKYMEEMLSKGFSP 544
GFCREG A DACK+++DM +NGCLPNLVSY +L N LCD GM + A Y+EEM KGF P
Sbjct: 326 GFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMTLKGFYP 385
Query: 545 HFAVIHSLVKGFCNVGRTEEACGVLTKSLEHGEAPHTDTWMIIVPLICEVEDAVKIGGVS 724
HF+VIH+LVKGF ++GR E+C VL L+ G+APH+DTW II+ ICEVED K V
Sbjct: 386 HFSVIHALVKGFHSIGRIHESCSVLEDMLKRGKAPHSDTWEIIISGICEVEDTAKFCEVW 445
Query: 725 EEVLRIEIKGHTRIVDAGIGLENYLIGKIRA 817
E++L+ +++ TRIV+AG GL YLI K++A
Sbjct: 446 EKILKKDVRRDTRIVEAGTGLGEYLIRKLQA 476
Score = 103 bits (258), Expect = 4e-20
Identities = 55/184 (29%), Positives = 98/184 (53%)
Frame = +2
Query: 140 RILMQALCRKSQVNGAVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRMKV 319
RIL + ++ + A DL ++ + G +P++ +Y L+ + C + AY L +M
Sbjct: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFE 240
Query: 320 KGCNPDIVHYNTVILGFCREGHAHDACKVIDDMHANGCLPNLVSYRTLVNSLCDMGMLDE 499
+ PD+ Y T++ G CR+ + A +++DM G +P+ +SY TL+NSLC L E
Sbjct: 241 RNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLRE 300
Query: 500 ANKYMEEMLSKGFSPHFAVIHSLVKGFCNVGRTEEACGVLTKSLEHGEAPHTDTWMIIVP 679
A K + M KG +P A ++++ GFC GR +AC +L +G P+ ++ +
Sbjct: 301 AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTN 360
Query: 680 LICE 691
+C+
Sbjct: 361 GLCD 364
Score = 65.5 bits (158), Expect = 1e-08
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 4/180 (2%)
Frame = +2
Query: 185 AVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKK-LREAYKLLCRMKVKGCNPDIVHYNTVI 361
A+ + M++ G P S +L L + +R A+ L + G P+ YN +I
Sbjct: 160 ALKVFYTMIDFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILI 219
Query: 362 LGFCREGHAHDACKVIDDMHANGCLPNLVSYRTLVNSLCDMGMLDEANKYMEEMLSKGFS 541
FC G+ A + + M +P++ +YRTL+ LC ++ A +E+ML+KG+
Sbjct: 220 RAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYI 279
Query: 542 PHFAVIHSLVKGFCNVGRTEEACGVLTKSLEHGEAPHTDTWMIIVPLIC---EVEDAVKI 712
P +L+ C + EA +L + G P + ++ C DA KI
Sbjct: 280 PDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKI 339
>ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545557|gb|EEF47061.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 262
Score = 397 bits (1019), Expect = e-108
Identities = 190/261 (72%), Positives = 216/261 (82%)
Frame = +2
Query: 44 MRAFCFNGDISIAYNLFNKMFKRDVVPDIESYRILMQALCRKSQVNGAVDLLEDMLNKGF 223
MRA C G++S+AY LFN+MFKRDV+PDIESYRILMQ LCR+SQVNGAV LLEDMLNKGF
Sbjct: 1 MRALCLTGELSVAYKLFNQMFKRDVLPDIESYRILMQGLCRRSQVNGAVGLLEDMLNKGF 60
Query: 224 VPDSLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGHAHDACK 403
VPD LTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNT+I GFCREG A DA K
Sbjct: 61 VPDCLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTIISGFCREGRAMDARK 120
Query: 404 VIDDMHANGCLPNLVSYRTLVNSLCDMGMLDEANKYMEEMLSKGFSPHFAVIHSLVKGFC 583
V+ DM NGCLPNLVSYRTLV +CD GM DEA Y+EEM+ KGFSPHF+V H+LVKGFC
Sbjct: 121 VLGDMECNGCLPNLVSYRTLVAGICDQGMFDEAKSYLEEMILKGFSPHFSVSHALVKGFC 180
Query: 584 NVGRTEEACGVLTKSLEHGEAPHTDTWMIIVPLICEVEDAVKIGGVSEEVLRIEIKGHTR 763
VG+ EEACGV+ L+HGE PH DTW+II+P ICEV+D I ++ + +EI G TR
Sbjct: 181 IVGKIEEACGVVEVLLKHGEVPHADTWIIILPRICEVDDLEGIRQSLDKAMMVEIMGDTR 240
Query: 764 IVDAGIGLENYLIGKIRAKSR 826
IV+AGIGLE+YLI K + K R
Sbjct: 241 IVEAGIGLEDYLIKKAQPKWR 261