BLASTX nr result

ID: Glycyrrhiza24_contig00020828 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00020828
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]      148   4e-34
ref|XP_002520439.1| helicase, putative [Ricinus communis] gi|223...   122   4e-26
ref|XP_004153842.1| PREDICTED: helicase SKI2W-like, partial [Cuc...   118   4e-25
ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sati...   118   4e-25
ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]   114   8e-24

>ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]
          Length = 1342

 Score =  148 bits (374), Expect = 4e-34
 Identities = 80/103 (77%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
 Frame = +3

Query: 3   RGQKRENTSRMKH-GGNFSXXXXXXXXXXXXXXXWELRRADASMLLMLINKLSKKSLLPV 179
           R QKRENTS  KH G NF                WELRRADASMLLMLINKLSKKSLLPV
Sbjct: 585 RVQKRENTSHTKHHGANFYGTGRGYQNNGNGQSNWELRRADASMLLMLINKLSKKSLLPV 644

Query: 180 VIFCFSKNRCDKSADSMTRTDLTSSSEKSEIRLFCDKAFSRLK 308
           VIFCFSKNRCDKSADS+T TDLTSSSEKSEIRLFCDKAFSRLK
Sbjct: 645 VIFCFSKNRCDKSADSLTGTDLTSSSEKSEIRLFCDKAFSRLK 687


>ref|XP_002520439.1| helicase, putative [Ricinus communis] gi|223540281|gb|EEF41852.1|
           helicase, putative [Ricinus communis]
          Length = 1335

 Score =  122 bits (305), Expect = 4e-26
 Identities = 66/109 (60%), Positives = 76/109 (69%), Gaps = 8/109 (7%)
 Frame = +3

Query: 6   GQKRENTSRMK--------HGGNFSXXXXXXXXXXXXXXXWELRRADASMLLMLINKLSK 161
           G+KRE  +R K        + G+FS               W  RR++AS+ L L+NKLSK
Sbjct: 576 GKKREYLNRNKQNKHFGSQNAGSFSGTSWGNQNNGNGQNNWGSRRSEASLWLQLVNKLSK 635

Query: 162 KSLLPVVIFCFSKNRCDKSADSMTRTDLTSSSEKSEIRLFCDKAFSRLK 308
           KSLLPVVIFCFSKNRCDKSAD M+ TDLTSSSEKSEIR+FCDKAFSRLK
Sbjct: 636 KSLLPVVIFCFSKNRCDKSADGMSGTDLTSSSEKSEIRVFCDKAFSRLK 684


>ref|XP_004153842.1| PREDICTED: helicase SKI2W-like, partial [Cucumis sativus]
          Length = 520

 Score =  118 bits (296), Expect = 4e-25
 Identities = 62/99 (62%), Positives = 72/99 (72%)
 Frame = +3

Query: 12  KRENTSRMKHGGNFSXXXXXXXXXXXXXXXWELRRADASMLLMLINKLSKKSLLPVVIFC 191
           K+   S  ++ GNFS               W  RR+DAS+ L+LIN+LSKKSLLPVVIFC
Sbjct: 237 KQNKHSGSQNLGNFSGTSWGNQKNGDGHNNWGSRRSDASLWLLLINRLSKKSLLPVVIFC 296

Query: 192 FSKNRCDKSADSMTRTDLTSSSEKSEIRLFCDKAFSRLK 308
           FSKNRCDKSAD++   DLTSSSEKSEIR+FCDKAFSRLK
Sbjct: 297 FSKNRCDKSADNIYSIDLTSSSEKSEIRVFCDKAFSRLK 335


>ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sativus]
          Length = 1352

 Score =  118 bits (296), Expect = 4e-25
 Identities = 62/99 (62%), Positives = 72/99 (72%)
 Frame = +3

Query: 12  KRENTSRMKHGGNFSXXXXXXXXXXXXXXXWELRRADASMLLMLINKLSKKSLLPVVIFC 191
           K+   S  ++ GNFS               W  RR+DAS+ L+LIN+LSKKSLLPVVIFC
Sbjct: 605 KQNKHSGSQNLGNFSGTSWGNQKNGDGHNNWGSRRSDASLWLLLINRLSKKSLLPVVIFC 664

Query: 192 FSKNRCDKSADSMTRTDLTSSSEKSEIRLFCDKAFSRLK 308
           FSKNRCDKSAD++   DLTSSSEKSEIR+FCDKAFSRLK
Sbjct: 665 FSKNRCDKSADNIYSIDLTSSSEKSEIRVFCDKAFSRLK 703


>ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]
          Length = 1379

 Score =  114 bits (285), Expect = 8e-24
 Identities = 63/110 (57%), Positives = 71/110 (64%), Gaps = 8/110 (7%)
 Frame = +3

Query: 3   RGQKRENTSRMKHG--------GNFSXXXXXXXXXXXXXXXWELRRADASMLLMLINKLS 158
           R Q+REN  R K          GNF                W  RR++AS+ L+LINKLS
Sbjct: 614 RAQRRENPGRGKQNKYSGSQKVGNFYGTGGGNQNSSGSQSNWGSRRSEASLWLLLINKLS 673

Query: 159 KKSLLPVVIFCFSKNRCDKSADSMTRTDLTSSSEKSEIRLFCDKAFSRLK 308
           KKSLLPVVIFCFSKNRCD SAD MT  DLTSSSEK EI +FC++AFSRLK
Sbjct: 674 KKSLLPVVIFCFSKNRCDISADKMTGIDLTSSSEKHEIHVFCERAFSRLK 723


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