BLASTX nr result

ID: Glycyrrhiza24_contig00020660 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00020660
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003548373.1| PREDICTED: zinc finger CCCH domain-containin...    84   1e-14
ref|XP_003627367.1| Zinc finger CCCH domain-containing protein [...    76   3e-12
ref|XP_002272277.1| PREDICTED: zinc finger CCCH domain-containin...    64   1e-08

>ref|XP_003548373.1| PREDICTED: zinc finger CCCH domain-containing protein 62-like
           [Glycine max]
          Length = 463

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/58 (68%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
 Frame = +1

Query: 61  YHGKPLANANHFHHPLMMPNGESY-KQKQLCRHFSRGRCYFFGDNCKFLHDLRDKGNV 231
           +H  PLANANH     ++P+ ESY KQKQ+CRH++RGRCY+ GDNCKFLHDLRDKGNV
Sbjct: 409 HHRMPLANANHSQQ--VLPDRESYDKQKQVCRHYARGRCYY-GDNCKFLHDLRDKGNV 463


>ref|XP_003627367.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355521389|gb|AET01843.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 396

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 42/88 (47%), Positives = 51/88 (57%), Gaps = 18/88 (20%)
 Frame = +1

Query: 10  KQYRPFIAETNGFAERTYHGKPLANANHF------------------HHPLMMPNGESYK 135
           ++Y  FIAETN  A  +Y  KPL +ANHF                  H    + N ESY+
Sbjct: 312 ERYNAFIAETNRRA--SYQRKPLTSANHFVPRSANANHFVPRSENANHMHTSISNRESYQ 369

Query: 136 QKQLCRHFSRGRCYFFGDNCKFLHDLRD 219
           QKQ CRHF+RGRC+ +GDNCKFLH  RD
Sbjct: 370 QKQFCRHFARGRCH-YGDNCKFLHGSRD 396


>ref|XP_002272277.1| PREDICTED: zinc finger CCCH domain-containing protein 62 [Vitis
           vinifera] gi|297742965|emb|CBI35832.3| unnamed protein
           product [Vitis vinifera]
          Length = 438

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 7/64 (10%)
 Frame = +1

Query: 46  FAERTYHGKPLANANHFHH--PLM-----MPNGESYKQKQLCRHFSRGRCYFFGDNCKFL 204
           FA    H +PL + NHF    PL      MP    +  KQ+CRH+++GRCY FGDNCKFL
Sbjct: 372 FANNHSHREPLRSMNHFPPVIPLQRGYPPMPPSWGHNDKQVCRHYAKGRCY-FGDNCKFL 430

Query: 205 HDLR 216
           HDLR
Sbjct: 431 HDLR 434


Top