BLASTX nr result

ID: Glycyrrhiza24_contig00020628 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00020628
         (399 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containi...   110   2e-22
ref|XP_003617308.1| Auxin response factor [Medicago truncatula] ...   107   1e-21
ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containi...    96   2e-18
ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17
ref|XP_002307901.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17

>ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  110 bits (274), Expect = 2e-22
 Identities = 48/63 (76%), Positives = 58/63 (92%)
 Frame = -3

Query: 397 NLFNRLQAEGIRPDAFTYNTLISRQCYEGLFNDACLLLHKGVDNGFTPNEITWSILVSCF 218
           NLFN+LQ+EGIRPDA TYNTLISR C+EG+FNDACLLL+KGVD+GF PNE+TWSIL++  
Sbjct: 643 NLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYI 702

Query: 217 VKE 209
           VK+
Sbjct: 703 VKK 705


>ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
           gi|355518643|gb|AET00267.1| Auxin response factor
           [Medicago truncatula]
          Length = 948

 Score =  107 bits (266), Expect = 1e-21
 Identities = 50/64 (78%), Positives = 54/64 (84%)
 Frame = -3

Query: 397 NLFNRLQAEGIRPDAFTYNTLISRQCYEGLFNDACLLLHKGVDNGFTPNEITWSILVSCF 218
           NLFN LQA+GI PDA TYNTLISR CYEGLFNDAC LL KGV NGF PNEITWSIL++ F
Sbjct: 638 NLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYF 697

Query: 217 VKES 206
           VK +
Sbjct: 698 VKNN 701


>ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 40/68 (58%), Positives = 54/68 (79%)
 Frame = -3

Query: 397 NLFNRLQAEGIRPDAFTYNTLISRQCYEGLFNDACLLLHKGVDNGFTPNEITWSILVSCF 218
           NLF+RLQ EG+RPDAFTYNT IS QC EG+ NDACL  ++G++NGF P+ +TW++LV   
Sbjct: 656 NLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTL 715

Query: 217 VKESVKRN 194
           +K+S + N
Sbjct: 716 LKQSNQEN 723


>ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 39/68 (57%), Positives = 53/68 (77%)
 Frame = -3

Query: 397 NLFNRLQAEGIRPDAFTYNTLISRQCYEGLFNDACLLLHKGVDNGFTPNEITWSILVSCF 218
           NLF+RLQ EG+RPDAFTYNT IS QC EG+ NDAC   ++G++NGF P+ +TW++LV   
Sbjct: 656 NLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTL 715

Query: 217 VKESVKRN 194
           +K+S + N
Sbjct: 716 LKQSNQEN 723


>ref|XP_002307901.1| predicted protein [Populus trichocarpa] gi|222853877|gb|EEE91424.1|
           predicted protein [Populus trichocarpa]
          Length = 724

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 42/71 (59%), Positives = 55/71 (77%)
 Frame = -3

Query: 397 NLFNRLQAEGIRPDAFTYNTLISRQCYEGLFNDACLLLHKGVDNGFTPNEITWSILVSCF 218
           NLF +LQAEGI+PD+ TYNTLI   C EG F+DAC LL++GV+NGF PN++TW+ILV  F
Sbjct: 648 NLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNF 707

Query: 217 VKESVKRNKTL 185
            K+S    +T+
Sbjct: 708 GKQSNSEGQTI 718


Top