BLASTX nr result

ID: Glycyrrhiza24_contig00020550 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00020550
         (687 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003524573.1| PREDICTED: katanin p80 WD40 repeat-containin...    90   5e-16
ref|XP_002513719.1| katanin P80 subunit, putative [Ricinus commu...    89   1e-15
ref|XP_002316424.1| predicted protein [Populus trichocarpa] gi|2...    88   2e-15
ref|XP_002268907.2| PREDICTED: katanin p80 WD40 repeat-containin...    86   5e-15
emb|CBI35338.3| unnamed protein product [Vitis vinifera]               86   5e-15

>ref|XP_003524573.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
           1-like [Glycine max]
          Length = 200

 Score = 89.7 bits (221), Expect = 5e-16
 Identities = 45/50 (90%), Positives = 46/50 (92%)
 Frame = -1

Query: 687 VDIEAEKRLERCNLCFIELEKVKRCLPSFTRRGGSIAKSAQELNLALQDV 538
           VDIEAE RLERCNLCF ELEKVKR LPS +RRGGSIAKSAQELNLALQDV
Sbjct: 150 VDIEAENRLERCNLCFTELEKVKRFLPSLSRRGGSIAKSAQELNLALQDV 199


>ref|XP_002513719.1| katanin P80 subunit, putative [Ricinus communis]
           gi|223547170|gb|EEF48666.1| katanin P80 subunit,
           putative [Ricinus communis]
          Length = 803

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = -1

Query: 687 VDIEAEKRLERCNLCFIELEKVKRCLPSFTRRGGSIAKSAQELNLALQDVS 535
           VDIEAE+RLERCNLCF+ELEKVKRCLP+  RRGGS+AK  QELNLALQD S
Sbjct: 753 VDIEAEQRLERCNLCFVELEKVKRCLPTLMRRGGSVAKITQELNLALQDDS 803


>ref|XP_002316424.1| predicted protein [Populus trichocarpa] gi|222865464|gb|EEF02595.1|
           predicted protein [Populus trichocarpa]
          Length = 728

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 41/51 (80%), Positives = 48/51 (94%)
 Frame = -1

Query: 687 VDIEAEKRLERCNLCFIELEKVKRCLPSFTRRGGSIAKSAQELNLALQDVS 535
           VDIEAE+RLERCN+CF+ELEKVKRCL + TR+GGS+AK AQELNLALQ+VS
Sbjct: 678 VDIEAEQRLERCNICFVELEKVKRCLLTLTRKGGSVAKYAQELNLALQEVS 728


>ref|XP_002268907.2| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
           1-like [Vitis vinifera]
          Length = 800

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 40/50 (80%), Positives = 46/50 (92%)
 Frame = -1

Query: 687 VDIEAEKRLERCNLCFIELEKVKRCLPSFTRRGGSIAKSAQELNLALQDV 538
           VDI+AE+RLERCNLCFIELEK+K CLP+ TRRGGS+AK AQELNLAL +V
Sbjct: 750 VDIQAEQRLERCNLCFIELEKIKHCLPALTRRGGSVAKLAQELNLALLEV 799


>emb|CBI35338.3| unnamed protein product [Vitis vinifera]
          Length = 989

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 40/50 (80%), Positives = 46/50 (92%)
 Frame = -1

Query: 687  VDIEAEKRLERCNLCFIELEKVKRCLPSFTRRGGSIAKSAQELNLALQDV 538
            VDI+AE+RLERCNLCFIELEK+K CLP+ TRRGGS+AK AQELNLAL +V
Sbjct: 939  VDIQAEQRLERCNLCFIELEKIKHCLPALTRRGGSVAKLAQELNLALLEV 988


Top