BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00020504
         (1622 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   626   e-177
ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul...   595   e-167
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   517   e-144
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   506   e-141
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   472   e-130

>ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine
            max]
          Length = 427

 Score =  626 bits (1614), Expect = e-177
 Identities = 317/409 (77%), Positives = 351/409 (85%), Gaps = 1/409 (0%)
 Frame = -3

Query: 1428 SVTRQ-SDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLR 1252
            +VTR   DKWLTLPPV+A+ S+S+  NQL SST  TALKWV+RCCPHLP+ALVHKLFRLR
Sbjct: 22   AVTRPWEDKWLTLPPVSASSSASVELNQL-SSTPTTALKWVVRCCPHLPRALVHKLFRLR 80

Query: 1251 RVRMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEINFIRSL 1072
            +VR+ PA + +Q QT KRVAAKDTLN+GDRI LP SV+   TP     +T ++INFIR+L
Sbjct: 81   QVRIHPA-TVIQQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPT-HSHLTPQQINFIRTL 138

Query: 1071 VIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDCSGILV 892
            VIYKDPAILVLNKPPG+PVQGG+N+KRSLD VAAA LNY  S+PPRLVHRLDRDCSGILV
Sbjct: 139  VIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILV 198

Query: 891  MGRTQTSAAVLHSIFRERTSRASDETGTEKKILQRRYWALVIGCPRRSRGLVTAPLGKVV 712
            MGRT TS  VLHSIFRE+TSRASD+ G EK+ILQRRYWALV+GCPRR +GLVTA LGKVV
Sbjct: 199  MGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVV 258

Query: 711  VDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVL 532
            VDNG+SDRITIVDNSTL+SSQHAITEYRVI SSS GYTWLEL+PLTGRKHQLRVHCAEVL
Sbjct: 259  VDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVL 318

Query: 531  GTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXEILPFGLNLNKGSISEKHPRLHL 352
            GTPIVGDYKYGWQAHRKWGHFDL N            + LPFGLNLNKGSISE HPRLHL
Sbjct: 319  GTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEK-LPFGLNLNKGSISENHPRLHL 377

Query: 351  HCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 205
            HCKQ+VLPNI QALQNVQSAS+ DLS+VE L L ADLPPYM+RSWDVTN
Sbjct: 378  HCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 426


>ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501934|gb|AES83137.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 430

 Score =  595 bits (1534), Expect = e-167
 Identities = 308/419 (73%), Positives = 342/419 (81%), Gaps = 10/419 (2%)
 Frame = -3

Query: 1428 SVTRQSDKWLTLPPVTATVSSSLAANQLCSSTSPTALKWVLRCCPHLPKALVHKLFRLRR 1249
            S   +  KWLTLPPV+ TV++S       SSTS  ALKWV+RCCP LPK L+HKLFRL++
Sbjct: 21   SAVAEDGKWLTLPPVSTTVNTS------SSSTSTPALKWVIRCCPELPKTLIHKLFRLKQ 74

Query: 1248 VRMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREM----PTP---KLECRVTAKEI 1090
            VRMLP      D   KRV  KDTLNSGDRIFLP+SV++     PTP   +    +TAK+I
Sbjct: 75   VRMLPRQQ--DDNKFKRVTPKDTLNSGDRIFLPNSVKQQIPLTPTPPKHESPLTLTAKQI 132

Query: 1089 NFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRD 910
            NFIRSLVIYKDP ILVLNKPPG+PVQGG+N+K SLD VAA  LNY+ S+PPRLVHRLDRD
Sbjct: 133  NFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRLVHRLDRD 192

Query: 909  CSGILVMGRTQTSAAVLHSIFRERTSRAS-DETGTEKKILQRRYWALVIGCPRRSRGLVT 733
            CSGILVMGRT+TS A+LHSIFRE+TSRAS +E  TEK ILQRRYWALV+GCPRRS G+V 
Sbjct: 193  CSGILVMGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCPRRSGGVVN 252

Query: 732  APLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLR 553
            APLGKVVVDNGKSDRITIVDNS LLSSQHA+TEYRVI SSSHG+TWLELSPLTGRKHQLR
Sbjct: 253  APLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRKHQLR 312

Query: 552  VHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXEILPFGLNLNKGSISE 373
            VHCAEVLGTPIVGDYKYG QAH+KWG FD SN            E LPFGLNLNKGSIS+
Sbjct: 313  VHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSN-LEDSTEEHLKEEALPFGLNLNKGSISD 371

Query: 372  KHPRLHLHCKQIVLPNIFQALQNVQSA--SNYDLSVVEALNLEADLPPYMRRSWDVTNS 202
            KHPRLHLHCKQIVLPNI QALQNVQS   S+YDLS VE+L LEADLPPYM++SW+VTNS
Sbjct: 372  KHPRLHLHCKQIVLPNISQALQNVQSVSDSSYDLSAVESLELEADLPPYMKKSWEVTNS 430


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  517 bits (1332), Expect = e-144
 Identities = 255/416 (61%), Positives = 315/416 (75%), Gaps = 9/416 (2%)
 Frame = -3

Query: 1422 TRQSDKWLTLPPVTATVSSSLAANQLCS------STSPTALKWVLRCCPHLPKALVHKLF 1261
            T+ + K+ TLPP T+T+S S     L +      ST  TALKWVLRCCP LP+ LV KLF
Sbjct: 122  TKNTGKFFTLPPYTSTISGSALGKALSATATAKASTETTALKWVLRCCPELPRNLVQKLF 181

Query: 1260 RLRRVR--MLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTPKLECRVTAKEIN 1087
            RLR+V+  +L       +   KRVAAKD +N GDRIFLP SV+ +P  K +C    KE N
Sbjct: 182  RLRQVKRELLNVGDGEMEHKTKRVAAKDLMNVGDRIFLPISVQALPFEKQKCHCGEKEAN 241

Query: 1086 FIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLDRDC 907
            FIR L +YKD AI+V+NKPPG+PVQGG+ +K S D +AA+CL+Y+ SEPPRLVHRLDRD 
Sbjct: 242  FIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDS 301

Query: 906  SGILVMGRTQTSAAVLHSIFRERTSRASD-ETGTEKKILQRRYWALVIGCPRRSRGLVTA 730
            SGILVMGRTQTS  VLHS+FRE+T  AS+ + G  ++ILQR+YWALVIG PRR +G+++A
Sbjct: 302  SGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISA 361

Query: 729  PLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRV 550
            PLGKVVVD+GKSDRIT+V+N+   S QHA+T+YRV+  SSHGY WLELSP+TGRKHQLRV
Sbjct: 362  PLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVM-ESSHGYAWLELSPITGRKHQLRV 420

Query: 549  HCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXEILPFGLNLNKGSISEK 370
            HCAEVLGTPIVGDYKYGWQ HRKW      N            +ILPFG++L  GSISEK
Sbjct: 421  HCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCKKILPFGIDLESGSISEK 480

Query: 369  HPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTNS 202
            HPRLHLHCKQ+VLP++ QAL+ VQ++SNYD S ++++ L+A LP YM+RSWD+ NS
Sbjct: 481  HPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQRSWDILNS 536


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  506 bits (1302), Expect = e-141
 Identities = 262/422 (62%), Positives = 310/422 (73%), Gaps = 20/422 (4%)
 Frame = -3

Query: 1407 KWLTLPPVTATVSSS------------LAANQLCSSTSPTALKWVLRCCPHLPKALVHKL 1264
            KW TLP  T  V +S            L      +  S TALKWV+RCCP LP++LV KL
Sbjct: 55   KWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSLVQKL 114

Query: 1263 FRLRRVR-----MLPAASAVQDQT--LKRVAAKDTLNSGDRIFLPHSVREMPTPKLECRV 1105
            FRLR+VR     M+ +   VQ+Q   LKRVAAKD +N GD+I LP +V E P+ K E   
Sbjct: 115  FRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEFPSEKHEYHC 174

Query: 1104 TAKEINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVH 925
              +EINF+ +L +YKDPAI+V+NKPPGLPVQGG+ +KRSLD +AA  L Y+ SEPPRLVH
Sbjct: 175  NDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVH 234

Query: 924  RLDRDCSGILVMGRTQTSAAVLHSIFRERTSRASD-ETGTEKKILQRRYWALVIGCPRRS 748
            RLDRD SGIL+MGRTQTSA +LHSIFRE+T  AS+ +  T+K+ILQRRYWALVIG PRR 
Sbjct: 235  RLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRP 294

Query: 747  RGLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGR 568
            RGL++APLGKVVVD+GKS+RITIVDN   +SSQHAITEYRVI SS HGYTWLELSPLTGR
Sbjct: 295  RGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGR 354

Query: 567  KHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXEILPFGLNLNK 388
            KHQLRVHCAEVLGTPIVGDYKYGWQAHRKW     SN            +  PFGL+L  
Sbjct: 355  KHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGLDLES 414

Query: 387  GSISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVT 208
            GSI +K P LHLHCKQ+VLPN+  ALQN+Q ++  DLS +E+L   A LP +M+RSWD+ 
Sbjct: 415  GSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQRSWDIL 474

Query: 207  NS 202
            NS
Sbjct: 475  NS 476


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  472 bits (1215), Expect = e-130
 Identities = 255/481 (53%), Positives = 325/481 (67%), Gaps = 20/481 (4%)
 Frame = -3

Query: 1584 LRTSP------GLVVFVSQTIAVNGNKAMAMAAEPIFVRLGAXXXXXXXXXXXRHCHFSV 1423
            LRTSP      G +++ S    +    A++ A+EP+  +                     
Sbjct: 13   LRTSPSCTDPSGEILYFSIFHVLKSTLALSNASEPVSQQKNE------------------ 54

Query: 1422 TRQSDKWLTLPPVTATVSSSLAANQL----------CSSTSPTALKWVLRCCPHLPKALV 1273
             + S++W TLPP TATV+ S+  N++           S+ + TALKWV+RCCP LP++LV
Sbjct: 55   -KGSNRWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPRSLV 113

Query: 1272 HKLFRLRRV-RMLPAASAVQDQTLKRVAAKDTLNSGDRIFLPHSVREMPTPKLECRVTAK 1096
             KLFRLR+V R L          LKRVAAKD LN GD+IFLP SV+   T K       +
Sbjct: 114  QKLFRLRKVPRQLNVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFSTEKTRDYCNKE 173

Query: 1095 EINFIRSLVIYKDPAILVLNKPPGLPVQGGVNVKRSLDVVAAACLNYESSEPPRLVHRLD 916
            E  F+ SLV++KDPAILV+NKPPGLPVQGG+ VKRSLD +AA+CL+Y  SEPPRLVHRLD
Sbjct: 174  EETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLD 233

Query: 915  RDCSGILVMGRTQTSAAVLHSIFRERTSRAS---DETGTEKKILQRRYWALVIGCPRRSR 745
            RD SGIL+MGRT TS ++LHS+FRE+T  AS   +   +EKKIL +RYWALVIG PRRS+
Sbjct: 234  RDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGSPRRSK 293

Query: 744  GLVTAPLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRK 565
            GL+TAPLGK+V+D+G+S++I ++DN+  +  Q AIT+Y+VI  S HGYTWLEL PLTGRK
Sbjct: 294  GLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWLELCPLTGRK 352

Query: 564  HQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNPXXXXXXXXXXXEILPFGLNLNKG 385
            HQLRVHCAEVLGTPIVGDYKYGWQAH+ W  F  SN            + LPFGL+   G
Sbjct: 353  HQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPF-CSN----FHKNQGKKQFLPFGLDFESG 407

Query: 384  SISEKHPRLHLHCKQIVLPNIFQALQNVQSASNYDLSVVEALNLEADLPPYMRRSWDVTN 205
            SI+E +PRLHLHCKQ+ LP++  AL N   + + D S +E L L+A LP YM++SWD+ N
Sbjct: 408  SIAENNPRLHLHCKQLTLPDVSFALHN--DSLDRDCSRLECLELDAPLPSYMQKSWDIIN 465

Query: 204  S 202
            S
Sbjct: 466  S 466