BLASTX nr result
ID: Glycyrrhiza24_contig00020404
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00020404
(375 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003518581.1| PREDICTED: pentatricopeptide repeat-containi... 206 2e-51
ref|XP_003618091.1| Pentatricopeptide repeat-containing protein ... 203 1e-50
ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|2... 186 1e-45
gb|AFN88216.1| pentatricopeptide repeat-containing protein [Phas... 183 1e-44
emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera] 179 2e-43
>ref|XP_003518581.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic [Glycine max]
Length = 755
Score = 206 bits (524), Expect = 2e-51
Identities = 102/125 (81%), Positives = 114/125 (91%)
Frame = +1
Query: 1 QQLKLAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTII 180
QQ+KLAQQLHAFVLKS V+P+I++NAI+VMYSRCN +DTS KVFD M +RDAVSWNTII
Sbjct: 311 QQIKLAQQLHAFVLKSLAVTPVIVVNAIMVMYSRCNFVDTSLKVFDNMPQRDAVSWNTII 370
Query: 181 SAFVQNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTRHGIQ 360
S+FVQNGLDEEALMLVCEM+KQ F IDSVT TALLSAASN+R+S IGRQTHAYL RHGIQ
Sbjct: 371 SSFVQNGLDEEALMLVCEMEKQKFPIDSVTATALLSAASNIRSSYIGRQTHAYLIRHGIQ 430
Query: 361 FEGME 375
FEGME
Sbjct: 431 FEGME 435
Score = 61.6 bits (148), Expect = 6e-08
Identities = 31/115 (26%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Frame = +1
Query: 13 LAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMF--ERDAVSWNTIISA 186
+ +Q HA++++ + + + ++ MY++ L+ TS +F++ +RD +WN +I+
Sbjct: 416 IGRQTHAYLIRHG-IQFEGMESYLIDMYAKSRLVRTSELLFEQNCPSDRDLATWNAMIAG 474
Query: 187 FVQNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTRH 351
+ QNGL ++A++++ E + ++VT+ ++L A S++ ++ RQ HA+ RH
Sbjct: 475 YTQNGLSDKAILILREALVHKVMPNAVTLASILPACSSMGSTTFARQLHAFAIRH 529
>ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519426|gb|AET01050.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 828
Score = 203 bits (516), Expect = 1e-50
Identities = 102/125 (81%), Positives = 111/125 (88%)
Frame = +1
Query: 1 QQLKLAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTII 180
QQ+KLA+Q HAFV+KS P S IIILNA++VMYSRCN +DTS KVFDKM ERDAVSWNTII
Sbjct: 339 QQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTII 398
Query: 181 SAFVQNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTRHGIQ 360
SAFVQNG DEEALMLVCEMQKQ F+IDSVT TALLSAASNLRN +G+QTHAYL R GIQ
Sbjct: 399 SAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQ 458
Query: 361 FEGME 375
FEGME
Sbjct: 459 FEGME 463
Score = 62.4 bits (150), Expect = 4e-08
Identities = 33/122 (27%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Frame = +1
Query: 1 QQLKLAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDK--MFERDAVSWNT 174
+ L + +Q HA++++ + + + ++ MY++ I T+ +F++ +RD +WN
Sbjct: 440 RNLYVGKQTHAYLIRRG-IQFEGMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNA 498
Query: 175 IISAFVQNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTRHG 354
II+ + QNGL+E+A++L+ +M Q + ++VT+ ++L A S++ + + RQ H + R
Sbjct: 499 IIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGSMGLARQLHGFSIRRF 558
Query: 355 IQ 360
++
Sbjct: 559 LE 560
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/99 (29%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Frame = +1
Query: 55 VSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTIISAFVQNGLDEEAL-MLVC 231
VS + ++++ ++M+S +D + VFD+ ++ WNT+I A+VQN EA+ + +
Sbjct: 255 VSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQ 314
Query: 232 EMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTR 348
++ + V D VT+ ++L+A S L+ + Q HA++ +
Sbjct: 315 ALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVIK 353
Score = 56.6 bits (135), Expect = 2e-06
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +1
Query: 13 LAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTIISAFV 192
LA+QLH F ++ + + + ++ YS+C I + VF + E+++V++ T++ +
Sbjct: 546 LARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEKNSVTYTTMMMCYG 605
Query: 193 QNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTRHGIQ-FEG 369
Q+G+ + AL L M + G D+VT A+LSA + ++ L G+Q FE
Sbjct: 606 QHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACN-----------YSGLVDEGLQIFES 654
Query: 370 ME 375
ME
Sbjct: 655 ME 656
>ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|222854749|gb|EEE92296.1|
predicted protein [Populus trichocarpa]
Length = 465
Score = 186 bits (473), Expect = 1e-45
Identities = 93/125 (74%), Positives = 108/125 (86%)
Frame = +1
Query: 1 QQLKLAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTII 180
Q L LAQQ HAFV+K+ V P++I NAI+VMYSRCN + TSF+VF+KM ERD VSWNT+I
Sbjct: 341 QCLDLAQQQHAFVIKNLAVFPVMITNAIIVMYSRCNSVHTSFEVFEKMVERDVVSWNTMI 400
Query: 181 SAFVQNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTRHGIQ 360
SAFVQNG+D+E LMLV EMQKQGF IDSVTVTALLSAASNLR+ IG+QT+AYL RHGIQ
Sbjct: 401 SAFVQNGMDDEGLMLVYEMQKQGFAIDSVTVTALLSAASNLRSQEIGKQTYAYLLRHGIQ 460
Query: 361 FEGME 375
FEGM+
Sbjct: 461 FEGMD 465
Score = 60.5 bits (145), Expect = 1e-07
Identities = 35/120 (29%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Frame = +1
Query: 1 QQLKLAQQLHAFVLK--SWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNT 174
+ K A L+ ++K S V+ + ++++ + M++ ID + KVFD E++ WNT
Sbjct: 237 EDFKNANALYGMLVKMGSEYVNDLFVVSSAIFMFAELGHIDFARKVFDHCLEKNTEIWNT 296
Query: 175 IISAFVQNGLDEEALMLVCE-MQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTRH 351
+I +VQN L E + L + ++ + V+D VT ++L+A S L+ + +Q HA++ ++
Sbjct: 297 MIGGYVQNNLLIEGIDLFLKAVETEQTVLDDVTFLSVLTAVSQLQCLDLAQQQHAFVIKN 356
>gb|AFN88216.1| pentatricopeptide repeat-containing protein [Phaseolus vulgaris]
Length = 499
Score = 183 bits (464), Expect = 1e-44
Identities = 91/113 (80%), Positives = 102/113 (90%)
Frame = +1
Query: 37 VLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTIISAFVQNGLDEEA 216
VL V+PII++NAI+VMYSRC+ +DTSFKVF+KM ERD VSWNTII++FVQNGLDEEA
Sbjct: 22 VLSIVGVTPIIVVNAIIVMYSRCSSVDTSFKVFEKMSERDGVSWNTIITSFVQNGLDEEA 81
Query: 217 LMLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTRHGIQFEGME 375
LMLVCEMQKQ F IDSVTVTALLSAASN+R+S IGRQTHAYL RHGIQFEGME
Sbjct: 82 LMLVCEMQKQRFTIDSVTVTALLSAASNMRDSYIGRQTHAYLIRHGIQFEGME 134
Score = 59.3 bits (142), Expect = 3e-07
Identities = 31/114 (27%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +1
Query: 13 LAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKM--FERDAVSWNTIISA 186
+ +Q HA++++ + + + ++ MY++ LI TS +F++ +RD SWN +I+
Sbjct: 115 IGRQTHAYLIRHG-IQFEGMESYLIDMYAKSGLITTSELLFEQNGPSDRDLASWNAMIAG 173
Query: 187 FVQNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTR 348
+ QNGL ++A++++ E + ++VT+ ++L + S++ ++ I RQ H + R
Sbjct: 174 YTQNGLSDKAILILREALVRKVTPNAVTLASILPSCSSMGSTAIARQLHGFSIR 227
Score = 55.1 bits (131), Expect = 6e-06
Identities = 30/95 (31%), Positives = 54/95 (56%)
Frame = +1
Query: 13 LAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTIISAFV 192
+A+QLH F ++ + + A+V YS+ I + VF + +++V++ T+I ++
Sbjct: 217 IARQLHGFSIRQLLDENVYVGTALVDAYSKLGAISYAENVFIRTLAKNSVTYTTMIMSYG 276
Query: 193 QNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAAS 297
Q+G+ + AL L M + G D+VT A+LSA S
Sbjct: 277 QHGMGKRALALYDSMLRSGIKPDAVTFIAILSACS 311
>emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
Length = 825
Score = 179 bits (454), Expect = 2e-43
Identities = 87/125 (69%), Positives = 104/125 (83%)
Frame = +1
Query: 1 QQLKLAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTII 180
Q L L +QLHA++LKS + ++ILNAI+VMYSRC I TSFKVF M ERD V+WNT++
Sbjct: 336 QWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMV 395
Query: 181 SAFVQNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTRHGIQ 360
SAFVQNGLD+E LMLV EMQKQGF++DSVT+TALLS ASNLR+ IG+Q HAYL RHGIQ
Sbjct: 396 SAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ 455
Query: 361 FEGME 375
FEGM+
Sbjct: 456 FEGMD 460
Score = 66.6 bits (161), Expect = 2e-09
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Frame = +1
Query: 16 AQQLHAFVLK--SWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTIISAF 189
A L+ V+K S V ++++ + MY+ +D + ++FD ER+ WNT+I +
Sbjct: 237 ANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGY 296
Query: 190 VQNGLDEEAL-MLVCEMQKQGFVIDSVTVTALLSAASNLRNSCIGRQTHAYLTR 348
VQN EA+ + V M+ + F +D VT + L+A S L+ +GRQ HAY+ +
Sbjct: 297 VQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILK 350
Score = 59.3 bits (142), Expect = 3e-07
Identities = 28/91 (30%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = +1
Query: 82 IVVMYSRCNLIDTSFKVFDK--MFERDAVSWNTIISAFVQNGLDEEALMLVCEMQKQGFV 255
++ MY++ LI T+ ++F+K ++RD +WN +I+ + QNGL EE + +M +Q
Sbjct: 463 LIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVR 522
Query: 256 IDSVTVTALLSAASNLRNSCIGRQTHAYLTR 348
++VT+ ++L A + + +G+Q H + R
Sbjct: 523 PNAVTLASILPACNPMGTIGLGKQIHGFAIR 553
Score = 59.3 bits (142), Expect = 3e-07
Identities = 32/95 (33%), Positives = 55/95 (57%)
Frame = +1
Query: 13 LAQQLHAFVLKSWPVSPIIILNAIVVMYSRCNLIDTSFKVFDKMFERDAVSWNTIISAFV 192
L +Q+H F ++ + + + A++ MYS+ I + VF + E+++V++ T+I ++
Sbjct: 543 LGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYG 602
Query: 193 QNGLDEEALMLVCEMQKQGFVIDSVTVTALLSAAS 297
Q+G+ E AL L M G DSVT A+LSA S
Sbjct: 603 QHGMGERALSLFHAMLGSGIKPDSVTFVAILSACS 637