BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00020393
         (629 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   332   4e-89
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub...   321   8e-86
ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub...   308   4e-82
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              266   3e-69
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   266   3e-69

>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  332 bits (850), Expect = 4e-89
 Identities = 168/208 (80%), Positives = 185/208 (88%)
 Frame = +2

Query: 5    EELKIDMADVFQRCQDRLNSFNRRKKAYQFLRRTELFFSMSCSSMNYSAPCLTFLWLDCD 184
            EELKI+M +V+Q+CQ++LNSF+R+KK   F +RTEL FS  CS     APC+TFLW D  
Sbjct: 1036 EELKINMTEVYQKCQEKLNSFSRKKKLSPFFKRTELIFSEFCS-----APCVTFLWPD-- 1088

Query: 185  GNDLDKTTIFLADMICPVLLDTIIQGDPRISSANIIWVTPDTNTWVRNPSKSSNGELALD 364
            G DLD+TT  LADMICPVLL+TIIQGDPRISSA+IIWV P TNTWVRNPSKSSNGELALD
Sbjct: 1089 GVDLDQTTKVLADMICPVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALD 1148

Query: 365  IILEKAAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLA 544
            +ILEK AVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGI+CTFDQAIQRLA
Sbjct: 1149 VILEKEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLA 1208

Query: 545  ASVKMVAKGVLREHLLLLGSSMTCGGNL 628
            ASV+MVAKGVLREHL+LL SSMTCGGNL
Sbjct: 1209 ASVRMVAKGVLREHLILLASSMTCGGNL 1236


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
          Length = 2020

 Score =  321 bits (822), Expect = 8e-86
 Identities = 161/208 (77%), Positives = 182/208 (87%)
 Frame = +2

Query: 5    EELKIDMADVFQRCQDRLNSFNRRKKAYQFLRRTELFFSMSCSSMNYSAPCLTFLWLDCD 184
            EELKI MA+VF++C +RL SF+R+KK  Q+L+  EL FS SCSS + +APCLTF WL   
Sbjct: 955  EELKISMANVFEKCLERLKSFSRKKKVNQYLKNIELSFSESCSSSHPAAPCLTF-WLKNH 1013

Query: 185  GNDLDKTTIFLADMICPVLLDTIIQGDPRISSANIIWVTPDTNTWVRNPSKSSNGELALD 364
             +DLD     L++ ICPVL +TII+GDPRISSA+IIWV+PDTNTWVRNP KSSNGELALD
Sbjct: 1014 DSDLDNAVKVLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALD 1073

Query: 365  IILEKAAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLA 544
            I+LE+ AVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR+A
Sbjct: 1074 IVLEEEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVA 1133

Query: 545  ASVKMVAKGVLREHLLLLGSSMTCGGNL 628
            ASVKMVAKGVLREHL+LL SSMTCGGNL
Sbjct: 1134 ASVKMVAKGVLREHLILLASSMTCGGNL 1161


>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
          Length = 2098

 Score =  308 bits (790), Expect = 4e-82
 Identities = 162/224 (72%), Positives = 179/224 (79%), Gaps = 16/224 (7%)
 Frame = +2

Query: 5    EELKIDMADVFQRCQDRLNSFNRRKKAYQFLRRTELFFSM----------------SCSS 136
            EELKI MA VF +C +RL SF+++KK  Q L+  EL FS+                SCSS
Sbjct: 955  EELKISMAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSLFVGLYHFLIMFHLSSESCSS 1014

Query: 137  MNYSAPCLTFLWLDCDGNDLDKTTIFLADMICPVLLDTIIQGDPRISSANIIWVTPDTNT 316
             + +APCLTF WL    +DLD     LA+ ICPVL  TIIQGDPRISSA+IIWV+PDTNT
Sbjct: 1015 SHPAAPCLTF-WLKNYDSDLDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNT 1073

Query: 317  WVRNPSKSSNGELALDIILEKAAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQE 496
            WVRNP KSSNGELALDIILEK AVKQSGDAWR+VLD+CLPVLHLIDTRRSIPYAIKQIQE
Sbjct: 1074 WVRNPYKSSNGELALDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQE 1133

Query: 497  LLGISCTFDQAIQRLAASVKMVAKGVLREHLLLLGSSMTCGGNL 628
            LLGISCTFDQAIQR+AASVKMVAKGVLREHL+LL SSMTCGGNL
Sbjct: 1134 LLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNL 1177


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  266 bits (679), Expect = 3e-69
 Identities = 129/214 (60%), Positives = 159/214 (74%), Gaps = 6/214 (2%)
 Frame = +2

Query: 5    EELKIDMADVFQRCQDRLNSFNRRKKAYQFLRRTELFF------SMSCSSMNYSAPCLTF 166
            ++L + M +V Q+C++ +NSF ++K    F ++  L F        SC S     PCL F
Sbjct: 1011 QDLNVSMQEVCQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLF 1070

Query: 167  LWLDCDGNDLDKTTIFLADMICPVLLDTIIQGDPRISSANIIWVTPDTNTWVRNPSKSSN 346
             W     ++L++    LA  ICPVLL TII+GD R+ + NIIW++PDT TW+RNP KS  
Sbjct: 1071 FWQGNRDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRK 1130

Query: 347  GELALDIILEKAAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQ 526
            GELALDI+LEKAAVKQ GDAWRIVLD+CLPVLHLIDTRRSIPYAIKQ+QELLGISC FDQ
Sbjct: 1131 GELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQ 1190

Query: 527  AIQRLAASVKMVAKGVLREHLLLLGSSMTCGGNL 628
            A+QRL+ SV MVAKGVL+EHL+LL +SMTC GNL
Sbjct: 1191 AVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNL 1224


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  266 bits (679), Expect = 3e-69
 Identities = 129/214 (60%), Positives = 159/214 (74%), Gaps = 6/214 (2%)
 Frame = +2

Query: 5    EELKIDMADVFQRCQDRLNSFNRRKKAYQFLRRTELFF------SMSCSSMNYSAPCLTF 166
            ++L + M +V Q+C++ +NSF ++K    F ++  L F        SC S     PCL F
Sbjct: 951  QDLNVSMQEVCQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLF 1010

Query: 167  LWLDCDGNDLDKTTIFLADMICPVLLDTIIQGDPRISSANIIWVTPDTNTWVRNPSKSSN 346
             W     ++L++    LA  ICPVLL TII+GD R+ + NIIW++PDT TW+RNP KS  
Sbjct: 1011 FWQGNRDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRK 1070

Query: 347  GELALDIILEKAAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQ 526
            GELALDI+LEKAAVKQ GDAWRIVLD+CLPVLHLIDTRRSIPYAIKQ+QELLGISC FDQ
Sbjct: 1071 GELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQ 1130

Query: 527  AIQRLAASVKMVAKGVLREHLLLLGSSMTCGGNL 628
            A+QRL+ SV MVAKGVL+EHL+LL +SMTC GNL
Sbjct: 1131 AVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNL 1164