BLASTX nr result

ID: Glycyrrhiza24_contig00020376 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00020376
         (303 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003605075.1| Pre-mRNA-splicing factor ATP-dependent RNA h...   160   1e-37
ref|XP_003516464.1| PREDICTED: probable ATP-dependent RNA helica...   125   4e-27
ref|XP_003521949.1| PREDICTED: probable ATP-dependent RNA helica...   125   5e-27
ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helica...   103   2e-20
ref|XP_002302733.1| predicted protein [Populus trichocarpa] gi|2...    95   7e-18

>ref|XP_003605075.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Medicago
           truncatula] gi|355506130|gb|AES87272.1|
           Pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16 [Medicago truncatula]
          Length = 1331

 Score =  160 bits (404), Expect = 1e-37
 Identities = 78/100 (78%), Positives = 91/100 (91%)
 Frame = -3

Query: 301 DISLEKQPDEIISSSPTSCSIDEIKSTASKDGKDENCITNFNELSNIPNVSSRRPLTAPT 122
           D+S +KQPDEI SSSPTS SID+IKST SKD K+EN  TNFNELSN+P+VS++RPLT PT
Sbjct: 196 DVSTDKQPDEIRSSSPTSRSIDDIKSTNSKDRKNENPTTNFNELSNLPHVSTQRPLTTPT 255

Query: 121 IVHVYRPPEVEEKRKDLPIVMMEQEIMEAINDHSNVIICG 2
           +VHVYRPPEV+EKRKDLPIVMMEQEIMEAIN +S+VI+CG
Sbjct: 256 VVHVYRPPEVQEKRKDLPIVMMEQEIMEAINYNSSVIVCG 295


>ref|XP_003516464.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Glycine
           max]
          Length = 1403

 Score =  125 bits (314), Expect = 4e-27
 Identities = 69/100 (69%), Positives = 78/100 (78%)
 Frame = -3

Query: 301 DISLEKQPDEIISSSPTSCSIDEIKSTASKDGKDENCITNFNELSNIPNVSSRRPLTAPT 122
           DIS++K  DEI SS+  SCS DEIKST SKD  DEN   N NELSN+ + S+ R    PT
Sbjct: 275 DISIDKHLDEIRSST-MSCSTDEIKSTKSKDRTDEN--HNSNELSNLSDYSAPRWSNVPT 331

Query: 121 IVHVYRPPEVEEKRKDLPIVMMEQEIMEAINDHSNVIICG 2
           +VHVYRP EVE+KRKDLPIVMMEQEIMEAIND S+VIICG
Sbjct: 332 VVHVYRPTEVEDKRKDLPIVMMEQEIMEAINDRSSVIICG 371


>ref|XP_003521949.1| PREDICTED: probable ATP-dependent RNA helicase DHR1-like [Glycine
           max]
          Length = 1380

 Score =  125 bits (313), Expect = 5e-27
 Identities = 68/100 (68%), Positives = 76/100 (76%)
 Frame = -3

Query: 301 DISLEKQPDEIISSSPTSCSIDEIKSTASKDGKDENCITNFNELSNIPNVSSRRPLTAPT 122
           DIS++   DEI  SSP SCSIDEIK T SK   +EN   N NELSN+P  S+ R    PT
Sbjct: 251 DISIDNHLDEI-RSSPMSCSIDEIKGTKSKYRTNEN--HNSNELSNLPGYSAPRRSNVPT 307

Query: 121 IVHVYRPPEVEEKRKDLPIVMMEQEIMEAINDHSNVIICG 2
           +VHVYRP EVE+KRKDLPIVMMEQEIMEAIND S+VIICG
Sbjct: 308 VVHVYRPTEVEDKRKDLPIVMMEQEIMEAINDRSSVIICG 347


>ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Vitis
           vinifera]
          Length = 1414

 Score =  103 bits (256), Expect = 2e-20
 Identities = 54/88 (61%), Positives = 64/88 (72%)
 Frame = -3

Query: 265 SSSPTSCSIDEIKSTASKDGKDENCITNFNELSNIPNVSSRRPLTAPTIVHVYRPPEVEE 86
           +S+PTS + D  K+  SKD  D N   NF   SN+P+ S + P+T PT+VHV RP EVE 
Sbjct: 295 NSTPTSTTADGQKNIKSKDVPDWNLNLNFRGTSNLPDCSLQ-PITTPTVVHVSRPTEVEN 353

Query: 85  KRKDLPIVMMEQEIMEAINDHSNVIICG 2
            RKDLPIVMMEQEIMEAINDH+ VIICG
Sbjct: 354 NRKDLPIVMMEQEIMEAINDHTAVIICG 381


>ref|XP_002302733.1| predicted protein [Populus trichocarpa] gi|222844459|gb|EEE82006.1|
           predicted protein [Populus trichocarpa]
          Length = 1130

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 49/92 (53%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
 Frame = -3

Query: 274 EIISSSPTSCSIDEIKSTASKDGK-DENCITNFNELSNIPNVSSRRPLTAPTIVHVYRPP 98
           E+   S  + S  + + T+S  GK +E+   +  + SN P+    RP T PT+VHV RP 
Sbjct: 102 EVPKKSSQASSDHDARKTSSLMGKLNESSTVDLGKASNFPDFPLPRPPTTPTVVHVSRPD 161

Query: 97  EVEEKRKDLPIVMMEQEIMEAINDHSNVIICG 2
           EVE+KRKDLPI+MMEQEIMEAIN+HS VIICG
Sbjct: 162 EVEKKRKDLPIIMMEQEIMEAINEHSTVIICG 193