BLASTX nr result

ID: Glycyrrhiza24_contig00019945 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00019945
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003625502.1| Nuclear pore complex protein Nup205 [Medicag...   266   2e-69
ref|XP_003525930.1| PREDICTED: nuclear pore complex protein Nup2...   251   3e-65
ref|XP_003633105.1| PREDICTED: nuclear pore complex protein Nup2...   209   2e-52
emb|CBI28192.3| unnamed protein product [Vitis vinifera]              209   2e-52
ref|XP_002524488.1| hypothetical protein RCOM_0223370 [Ricinus c...   198   3e-49

>ref|XP_003625502.1| Nuclear pore complex protein Nup205 [Medicago truncatula]
           gi|355500517|gb|AES81720.1| Nuclear pore complex protein
           Nup205 [Medicago truncatula]
          Length = 2047

 Score =  266 bits (679), Expect = 2e-69
 Identities = 137/148 (92%), Positives = 141/148 (95%)
 Frame = +3

Query: 3   QCERYVLDSRGSLVERQAVVSRERLILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVS 182
           QCERYV+DSRGSLVERQAVVSRERLILGHCLVLSVL+VRTSPKDVKDLF VLKDS S VS
Sbjct: 295 QCERYVIDSRGSLVERQAVVSRERLILGHCLVLSVLIVRTSPKDVKDLFSVLKDSASEVS 354

Query: 183 ESNTTIKHQITFSLLFALVIAFVSDGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIV 362
           +SNT IKHQITFSLLFALVIAFVSDGL TVPDKASVLSS+TSFRHEFH LVMATGNDPIV
Sbjct: 355 QSNTAIKHQITFSLLFALVIAFVSDGLSTVPDKASVLSSNTSFRHEFHELVMATGNDPIV 414

Query: 363 EGFTGGIRLAWVVHLMLIQDVVAARETV 446
           EGFTGGIRLAWVVHLMLIQD VAARETV
Sbjct: 415 EGFTGGIRLAWVVHLMLIQDGVAARETV 442


>ref|XP_003525930.1| PREDICTED: nuclear pore complex protein Nup205-like [Glycine max]
          Length = 1931

 Score =  251 bits (642), Expect = 3e-65
 Identities = 128/148 (86%), Positives = 134/148 (90%)
 Frame = +3

Query: 3   QCERYVLDSRGSLVERQAVVSRERLILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVS 182
           QCE YVLDSRGSLVERQAVVSRERLILGHCLVLS+LVVRT PKD+KD+F VLKDS S VS
Sbjct: 190 QCESYVLDSRGSLVERQAVVSRERLILGHCLVLSILVVRTCPKDIKDIFSVLKDSASEVS 249

Query: 183 ESNTTIKHQITFSLLFALVIAFVSDGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIV 362
           ESN T+KHQITF LLFALVIAFVSDGL TVPDKASVLSS+TSFRHEFH LVM TGNDP V
Sbjct: 250 ESNATVKHQITFCLLFALVIAFVSDGLSTVPDKASVLSSNTSFRHEFHELVMTTGNDPHV 309

Query: 363 EGFTGGIRLAWVVHLMLIQDVVAARETV 446
           EGF GGIRLAWVVHLMLIQD V ARET+
Sbjct: 310 EGFVGGIRLAWVVHLMLIQDGVPARETI 337


>ref|XP_003633105.1| PREDICTED: nuclear pore complex protein Nup205-like [Vitis
           vinifera]
          Length = 1934

 Score =  209 bits (531), Expect = 2e-52
 Identities = 106/146 (72%), Positives = 121/146 (82%)
 Frame = +3

Query: 9   ERYVLDSRGSLVERQAVVSRERLILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVSES 188
           ERYVLDSRG+LVER+AVV RERLILGHCLVLSVLVVRTSPKDVKDLF  LKD  + ++ S
Sbjct: 192 ERYVLDSRGALVERRAVVFRERLILGHCLVLSVLVVRTSPKDVKDLFSTLKDCAAELNGS 251

Query: 189 NTTIKHQITFSLLFALVIAFVSDGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIVEG 368
           + TIK+QITFS+LF+LVIAF+SD LGTVPDKASVL  D +FR EF  +V+A+GNDPI EG
Sbjct: 252 SDTIKYQITFSILFSLVIAFISDALGTVPDKASVLCRDATFRREFQEIVIASGNDPIAEG 311

Query: 369 FTGGIRLAWVVHLMLIQDVVAARETV 446
           F   IRLAW  HLML+QD   A ETV
Sbjct: 312 FVDVIRLAWAAHLMLVQDATVATETV 337


>emb|CBI28192.3| unnamed protein product [Vitis vinifera]
          Length = 1889

 Score =  209 bits (531), Expect = 2e-52
 Identities = 106/146 (72%), Positives = 121/146 (82%)
 Frame = +3

Query: 9   ERYVLDSRGSLVERQAVVSRERLILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVSES 188
           ERYVLDSRG+LVER+AVV RERLILGHCLVLSVLVVRTSPKDVKDLF  LKD  + ++ S
Sbjct: 192 ERYVLDSRGALVERRAVVFRERLILGHCLVLSVLVVRTSPKDVKDLFSTLKDCAAELNGS 251

Query: 189 NTTIKHQITFSLLFALVIAFVSDGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIVEG 368
           + TIK+QITFS+LF+LVIAF+SD LGTVPDKASVL  D +FR EF  +V+A+GNDPI EG
Sbjct: 252 SDTIKYQITFSILFSLVIAFISDALGTVPDKASVLCRDATFRREFQEIVIASGNDPIAEG 311

Query: 369 FTGGIRLAWVVHLMLIQDVVAARETV 446
           F   IRLAW  HLML+QD   A ETV
Sbjct: 312 FVDVIRLAWAAHLMLVQDATVATETV 337


>ref|XP_002524488.1| hypothetical protein RCOM_0223370 [Ricinus communis]
           gi|223536276|gb|EEF37928.1| hypothetical protein
           RCOM_0223370 [Ricinus communis]
          Length = 1270

 Score =  198 bits (504), Expect = 3e-49
 Identities = 102/156 (65%), Positives = 119/156 (76%), Gaps = 9/156 (5%)
 Frame = +3

Query: 6   CERYVLDSRGSLVERQAVVSRERLILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVSE 185
           C+ YVLDSRG+L ER+AVV +ER +LGHCLVLSVLVVR S KDVKD+ Y LKDS S + E
Sbjct: 224 CDHYVLDSRGALSERRAVVHKERHLLGHCLVLSVLVVRISSKDVKDVIYTLKDSASELVE 283

Query: 186 SNTTIKHQ---------ITFSLLFALVIAFVSDGLGTVPDKASVLSSDTSFRHEFHALVM 338
            N T+KHQ         I F LLF+LVIAF+SD L  +PDKAS+LS D SFR EFH ++M
Sbjct: 284 VNGTLKHQAFIILFSLQIAFCLLFSLVIAFMSDALSALPDKASILSCDASFRKEFHEILM 343

Query: 339 ATGNDPIVEGFTGGIRLAWVVHLMLIQDVVAARETV 446
           AT NDP+VEGF GG+RLAW VHLMLI DV+ ARE V
Sbjct: 344 ATENDPVVEGFIGGVRLAWSVHLMLINDVITAREEV 379


Top