BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00019249
         (1560 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containi...   648   0.0  
ref|XP_003590960.1| Pentatricopeptide repeat-containing protein ...   611   e-172
ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containi...   608   e-171
dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]           607   e-171
ref|NP_566237.1| pentatricopeptide repeat-containing protein [Ar...   607   e-171

>ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
            chloroplastic-like [Glycine max]
          Length = 570

 Score =  648 bits (1671), Expect = 0.0
 Identities = 321/468 (68%), Positives = 388/468 (82%), Gaps = 2/468 (0%)
 Frame = -3

Query: 1558 SRKFDKAVGVLEMLEKHGDPDVFAYNAVISGFYKAGRLDSAHQVLDRMKNRGLAPNVVTY 1379
            S+  DKA+ V+ +LE HG PD+ AYNA+I+GF +A R+DSA+QVLDRMKN+G +P++VTY
Sbjct: 105  SKTIDKAIQVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTY 164

Query: 1378 NILVGSLCSNGELGLAMKVVNQLLLKDNCKPNAITYKILMEATLLEGGVDDAMKLLDDML 1199
            NIL+GSLCS G L  A++  NQLL K+NCKP  +TY IL+EATLL+GG+D+AMKLLD+ML
Sbjct: 165  NILIGSLCSRGMLDSALEFKNQLL-KENCKPTVVTYTILIEATLLQGGIDEAMKLLDEML 223

Query: 1198 SSGIQPDMFIYNAIVRVMCRKGLVGRAFELIRSISSKGYAPDVKSYNLLLRGLLNQGKWE 1019
               +QPDMF YN+I+R MCR+G V RAF++I SISSKGYAPDV +YN+LLRGLLNQGKWE
Sbjct: 224  EINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWE 283

Query: 1018 EGQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKAMKEKGLTPNAYCYDPLI 839
             G  LMSDMV++GCE NV TY+VLISS+CRDGKVEE VGLLK MK+KGL P+ YCYDPLI
Sbjct: 284  AGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLI 343

Query: 838  AAFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKADEALNVFEKLGEVGCP 659
            AA CKE RVD AIE LD MISDG +PDIV YN ILA LC+  +ADEAL++FEKLGEVGC 
Sbjct: 344  AALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCS 403

Query: 658  PNASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCSDAMVDQAIGL 479
            PNASSYN M SALW+ GHK+RAL M+LEML KGVDPD ITYN+L+SCLC D MVD+AI L
Sbjct: 404  PNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIEL 463

Query: 478  LVD--MESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETTYTSLVKGI 305
            LVD  MESSECKP+V+SYNIVLLGLC+V R++DAIEVLAAMVDKGCRPNETTYT L++GI
Sbjct: 464  LVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGI 523

Query: 304  IYAGWPNDAMELAISLVSMKAIPQHTLKRLFTIVPLPDV*YKELTLSE 161
             + G  NDA +LA +LV+M AI +H+ +RL+      DV Y++L LS+
Sbjct: 524  GFGGCLNDARDLATTLVNMDAISEHSFERLYKTFCKLDV-YRQLNLSD 570



 Score =  166 bits (419), Expect = 2e-38
 Identities = 100/365 (27%), Positives = 169/365 (46%), Gaps = 35/365 (9%)
 Frame = -3

Query: 1303 KDNCKPNAITYKILMEATLLEGGVDDAMKLLDDMLSSGIQPDMFIYNAIVRVMCRKGLVG 1124
            + N   N+ T  IL E T +   +    K     L      D  +  ++ R  C+ G   
Sbjct: 19   RTNSHSNSRTLPILNETTNINRTLSSVSKPQTHTLDF---KDTHLLKSLSR-SCKAGNFN 74

Query: 1123 RAFELIRSISSKGYAPDVKSYNLLLRGLLNQGKWEEGQNLMSDMVSKGCEPNVFTYNVLI 944
             +   +R + +KG+ PDV     L+ GL      ++   +M  + + G  P++  YN +I
Sbjct: 75   ESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG-HPDLIAYNAII 133

Query: 943  SSLCRDGKVEEAVGLLKAMKEKGLTPNAYCYDPLIAAFCKESRVDSAIEF---------- 794
            +  CR  +++ A  +L  MK KG +P+   Y+ LI + C    +DSA+EF          
Sbjct: 134  TGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCK 193

Query: 793  -------------------------LDSMISDGRLPDIVIYNRILASLCRNGKADEALNV 689
                                     LD M+     PD+  YN I+  +CR G  D A  +
Sbjct: 194  PTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQI 253

Query: 688  FEKLGEVGCPPNASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCS 509
               +   G  P+  +YNI+L  L N G      E++ +M+++G + +V+TY+ L+S +C 
Sbjct: 254  ISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCR 313

Query: 508  DAMVDQAIGLLVDMESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETT 329
            D  V++ +GLL DM+    KP    Y+ ++  LC+  R++ AIEVL  M+  GC P+   
Sbjct: 314  DGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVN 373

Query: 328  YTSLV 314
            Y +++
Sbjct: 374  YNTIL 378



 Score =  102 bits (255), Expect = 2e-19
 Identities = 54/198 (27%), Positives = 105/198 (53%)
 Frame = -3

Query: 829 CKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKADEALNVFEKLGEVGCPPNA 650
           CK    + ++ FL  +++ G  PD+V+  +++  L  +   D+A+ V   L   G  P+ 
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG-HPDL 126

Query: 649 SSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCSDAMVDQAIGLLVD 470
            +YN +++          A +++  M +KG  PD++TYN L+  LCS  M+D A+     
Sbjct: 127 IAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQ 186

Query: 469 MESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETTYTSLVKGIIYAGW 290
           +    CKPTV++Y I++        I++A+++L  M++   +P+  TY S+++G+   G+
Sbjct: 187 LLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGY 246

Query: 289 PNDAMELAISLVSMKAIP 236
            + A ++  S+ S    P
Sbjct: 247 VDRAFQIISSISSKGYAP 264


>ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355480008|gb|AES61211.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  611 bits (1575), Expect = e-172
 Identities = 302/465 (64%), Positives = 369/465 (79%), Gaps = 1/465 (0%)
 Frame = -3

Query: 1555 RKFDKAVGVLEMLEKHGDPDVFAYNAVISGFYKAGRLDSAHQVLDRMKNRGLAPNVVTYN 1376
            +K +KA+ V+E+LEKHG PDVFAYNAVISGF KA R+D A +VLDRMK RG  P+VVTYN
Sbjct: 126  KKIEKAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYN 185

Query: 1375 ILVGSLCSNGELGLAMKVVNQLLLKDNCKPNAITYKILMEATLLEGGVDDAMKLLDDMLS 1196
            IL+G+ C  G L LA++V++QLL KDNCKP  ITY IL+EAT+ +GG+D+AMKLLD+MLS
Sbjct: 186  ILIGNFCGRGRLDLALRVMDQLL-KDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLS 244

Query: 1195 SGIQPDMFIYNAIVRVMCRKGLVGRAFELIRSISSKGYAPDVKSYNLLLRGLLNQGKWEE 1016
             G++PD + YN +V  MC++G++ RAFE +  IS  G    V +YN+LLR LLN+GKWE 
Sbjct: 245  RGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEY 304

Query: 1015 GQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKAMKEKGLTPNAYCYDPLIA 836
            G+ LMSDM+ KGCEPN  TY+ LI++LCRDGK++EA  +LK MKEK L P+ Y YDPLI+
Sbjct: 305  GEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLIS 364

Query: 835  AFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKADEALNVFEKLGEVGCPP 656
            A C+E +VD AIEFLD MIS G LPDI+ YN ILASLC+NG ADEALN+FEKLGEVGCPP
Sbjct: 365  ALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPP 424

Query: 655  NASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCSDAMVDQAIGLL 476
            NA SYN +  ALW+ G KIRAL M+LEMLS G+DPD ITYN+L+SCLC D +VDQAI LL
Sbjct: 425  NAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELL 484

Query: 475  VDM-ESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETTYTSLVKGIIY 299
            VDM ES +C+PTVISYN VLLGLC+V RI DAIEVLAAMV++GC PNETTYT L++GI +
Sbjct: 485  VDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGF 544

Query: 298  AGWPNDAMELAISLVSMKAIPQHTLKRLFTIVPLPDV*YKELTLS 164
            AGW  DAMELA  LV+M AI + + KR   I P+ D  +KEL LS
Sbjct: 545  AGWRYDAMELANLLVNMDAISEDSFKRFQKIFPVFDA-HKELALS 588



 Score =  157 bits (396), Expect = 9e-36
 Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 35/327 (10%)
 Frame = -3

Query: 1144 CRKGLVGRAFELIRSISSKGYAPDVKSYNLLLRGLLNQGKWEEGQNLMSDMVSKGCEPNV 965
            C+      +   ++ + ++GY PDV     L++G  N  K E+   +M +++ K  +P+V
Sbjct: 88   CKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVM-EILEKHGKPDV 146

Query: 964  FTYNVLISSLCRDGKVEEAVGLLKAMKEKGLTPNAYCYDPLIAAFCKESR---------- 815
            F YN +IS  C+  +V+ A  +L  MK++G  P+   Y+ LI  FC   R          
Sbjct: 147  FAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQ 206

Query: 814  -------------------------VDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGK 710
                                     +D A++ LD M+S G  PD   YN ++  +C+ G 
Sbjct: 207  LLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGM 266

Query: 709  ADEALNVFEKLGEVGCPPNASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNA 530
             D A     ++ + GC    S+YNI+L  L N G      +++ +ML KG +P+ ITY+ 
Sbjct: 267  LDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYST 326

Query: 529  LMSCLCSDAMVDQAIGLLVDMESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKG 350
            L++ LC D  +D+A  +L  M+     P   SY+ ++  LCR  +++ AIE L  M+  G
Sbjct: 327  LITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGG 386

Query: 349  CRPNETTYTSLVKGIIYAGWPNDAMEL 269
              P+  +Y S++  +   G  ++A+ +
Sbjct: 387  HLPDILSYNSILASLCKNGNADEALNI 413



 Score =  149 bits (376), Expect = 2e-33
 Identities = 81/263 (30%), Positives = 148/263 (56%)
 Frame = -3

Query: 1027 KWEEGQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKAMKEKGLTPNAYCYD 848
            K++E    +  MV++G +P+V     LI       K+E+A+ +++ +++ G  P+ + Y+
Sbjct: 92   KYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG-KPDVFAYN 150

Query: 847  PLIAAFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKADEALNVFEKLGEV 668
             +I+ FCK  RVD A + LD M   G  PD+V YN ++ + C  G+ D AL V ++L + 
Sbjct: 151  AVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKD 210

Query: 667  GCPPNASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCSDAMVDQA 488
             C P   +Y I++ A    G    A++++ EMLS+G+ PD  TYN +++ +C + M+D+A
Sbjct: 211  NCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRA 270

Query: 487  IGLLVDMESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETTYTSLVKG 308
               L  +  + C   V +YNI+L  L    +     ++++ M+ KGC PN  TY++L+  
Sbjct: 271  FEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITA 330

Query: 307  IIYAGWPNDAMELAISLVSMKAI 239
            +   G  ++A  + + ++  KA+
Sbjct: 331  LCRDGKIDEAKNV-LKVMKEKAL 352



 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 49/166 (29%), Positives = 86/166 (51%)
 Frame = -3

Query: 748 YNRILASLCRNGKADEALNVFEKLGEVGCPPNASSYNIMLSALWNIGHKIRALEMVLEML 569
           + + L   C++ K DE+L   + +   G  P+      ++   +N+  KI     V+E+L
Sbjct: 80  FMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNM-KKIEKAIQVMEIL 138

Query: 568 SKGVDPDVITYNALMSCLCSDAMVDQAIGLLVDMESSECKPTVISYNIVLLGLCRVHRIN 389
            K   PDV  YNA++S  C    VD A  +L  M+    +P V++YNI++   C   R++
Sbjct: 139 EKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLD 198

Query: 388 DAIEVLAAMVDKGCRPNETTYTSLVKGIIYAGWPNDAMELAISLVS 251
            A+ V+  ++   C+P   TYT L++  I  G  ++AM+L   ++S
Sbjct: 199 LALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLS 244


>ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
            chloroplastic-like [Glycine max]
          Length = 576

 Score =  608 bits (1568), Expect = e-171
 Identities = 298/448 (66%), Positives = 369/448 (82%)
 Frame = -3

Query: 1558 SRKFDKAVGVLEMLEKHGDPDVFAYNAVISGFYKAGRLDSAHQVLDRMKNRGLAPNVVTY 1379
            S++ +KAV V+E+LE++GDPD FAYNAVISGF ++ R D+A++V+ RMK RG +P+VVTY
Sbjct: 125  SKRTEKAVRVMEILEQYGDPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTY 184

Query: 1378 NILVGSLCSNGELGLAMKVVNQLLLKDNCKPNAITYKILMEATLLEGGVDDAMKLLDDML 1199
            NIL+GSLC+ G+L LA+KV++QLL +DNC P  ITY IL+EAT++ G +DDAM+LLD+M+
Sbjct: 185  NILIGSLCARGKLDLALKVMDQLL-EDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMM 243

Query: 1198 SSGIQPDMFIYNAIVRVMCRKGLVGRAFELIRSISSKGYAPDVKSYNLLLRGLLNQGKWE 1019
            S G+QPDM+ YN IVR MC++GLV RAFE + ++++    P +  YNLLL+GLLN+G+WE
Sbjct: 244  SRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNT---TPSLNLYNLLLKGLLNEGRWE 300

Query: 1018 EGQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKAMKEKGLTPNAYCYDPLI 839
             G+ LMSDM+ KGCEPN+ TY+VLISSLCRDGK  EAV +L+ MKEKGL P+AYCYDPLI
Sbjct: 301  AGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLI 360

Query: 838  AAFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKADEALNVFEKLGEVGCP 659
            +AFCKE +VD AI F+D MIS G LPDIV YN I+ SLC+ G+ADEALN+F+KL EVGCP
Sbjct: 361  SAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCP 420

Query: 658  PNASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCSDAMVDQAIGL 479
            PNASSYN M  ALW+ G KIRAL M+LEMLS GVDPD ITYN+L+S LC D MVD+AIGL
Sbjct: 421  PNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGL 480

Query: 478  LVDMESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETTYTSLVKGIIY 299
            LVDME +E +PTVISYNIVLLGLC+ HRI DAIEVLA MVD GC+PNETTYT LV+G+ Y
Sbjct: 481  LVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGY 540

Query: 298  AGWPNDAMELAISLVSMKAIPQHTLKRL 215
            AGW + A+ELA SLVSM AI Q   +RL
Sbjct: 541  AGWRSYAVELAKSLVSMNAISQDLFRRL 568



 Score =  151 bits (381), Expect = 5e-34
 Identities = 94/365 (25%), Positives = 165/365 (45%), Gaps = 66/365 (18%)
 Frame = -3

Query: 1147 MCRKGLVGRAFELIRSISSKGYAPDV---------------------------------- 1070
            +C+ G    A   +  +  +GY PDV                                  
Sbjct: 87   LCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYGDPDS 146

Query: 1069 KSYNLLLRGLLNQGKWEEGQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKA 890
             +YN ++ G     +++    ++  M  +G  P+V TYN+LI SLC  GK++ A+ ++  
Sbjct: 147  FAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQ 206

Query: 889  MKEKGLTPNAYCYDPLIAAFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGK 710
            + E    P    Y  LI A      +D A+  LD M+S G  PD+  YN I+  +C+ G 
Sbjct: 207  LLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGL 266

Query: 709  ADEA------------LNVFEKL------------GE--------VGCPPNASSYNIMLS 626
             D A            LN++  L            GE         GC PN  +Y++++S
Sbjct: 267  VDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLIS 326

Query: 625  ALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCSDAMVDQAIGLLVDMESSECKP 446
            +L   G    A++++  M  KG++PD   Y+ L+S  C +  VD AIG + DM S+   P
Sbjct: 327  SLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLP 386

Query: 445  TVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETTYTSLVKGIIYAGWPNDAMELA 266
             +++YN ++  LC+  R ++A+ +   + + GC PN ++Y ++   +  +G    A+ + 
Sbjct: 387  DIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMI 446

Query: 265  ISLVS 251
            + ++S
Sbjct: 447  LEMLS 451



 Score =  147 bits (371), Expect = 8e-33
 Identities = 81/261 (31%), Positives = 143/261 (54%)
 Frame = -3

Query: 1051 LRGLLNQGKWEEGQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKAMKEKGL 872
            L  L   GK+ E    +  MV +G +P+V     LI  L    + E+AV +++ +++ G 
Sbjct: 84   LNRLCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYG- 142

Query: 871  TPNAYCYDPLIAAFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKADEALN 692
             P+++ Y+ +I+ FC+  R D+A   +  M   G  PD+V YN ++ SLC  GK D AL 
Sbjct: 143  DPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALK 202

Query: 691  VFEKLGEVGCPPNASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLC 512
            V ++L E  C P   +Y I++ A    G    A+ ++ EM+S+G+ PD+ TYN ++  +C
Sbjct: 203  VMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMC 262

Query: 511  SDAMVDQAIGLLVDMESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNET 332
               +VD+A   + ++ ++   P++  YN++L GL    R      +++ M+ KGC PN  
Sbjct: 263  KRGLVDRAFEFVSNLNTT---PSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIV 319

Query: 331  TYTSLVKGIIYAGWPNDAMEL 269
            TY+ L+  +   G   +A+++
Sbjct: 320  TYSVLISSLCRDGKAGEAVDV 340



 Score =  107 bits (266), Expect = 1e-20
 Identities = 57/202 (28%), Positives = 108/202 (53%)
 Frame = -3

Query: 829 CKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKADEALNVFEKLGEVGCPPNA 650
           CK  +   A+ FL+ M+  G  PD+++  +++  L  + + ++A+ V E L + G  P++
Sbjct: 88  CKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYG-DPDS 146

Query: 649 SSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCSDAMVDQAIGLLVD 470
            +YN ++S          A  ++L M  +G  PDV+TYN L+  LC+   +D A+ ++  
Sbjct: 147 FAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQ 206

Query: 469 MESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETTYTSLVKGIIYAGW 290
           +    C PTVI+Y I++        I+DA+ +L  M+ +G +P+  TY  +V+G+   G 
Sbjct: 207 LLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGL 266

Query: 289 PNDAMELAISLVSMKAIPQHTL 224
            + A E   +L +  ++  + L
Sbjct: 267 VDRAFEFVSNLNTTPSLNLYNL 288



 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 49/164 (29%), Positives = 87/164 (53%)
 Frame = -3

Query: 742 RILASLCRNGKADEALNVFEKLGEVGCPPNASSYNIMLSALWNIGHKIRALEMVLEMLSK 563
           + L  LC+ GK  EAL   E++ + G  P+      ++  L+      +A+  V+E+L +
Sbjct: 82  KALNRLCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVR-VMEILEQ 140

Query: 562 GVDPDVITYNALMSCLCSDAMVDQAIGLLVDMESSECKPTVISYNIVLLGLCRVHRINDA 383
             DPD   YNA++S  C     D A  +++ M+     P V++YNI++  LC   +++ A
Sbjct: 141 YGDPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLA 200

Query: 382 IEVLAAMVDKGCRPNETTYTSLVKGIIYAGWPNDAMELAISLVS 251
           ++V+  +++  C P   TYT L++  I  G  +DAM L   ++S
Sbjct: 201 LKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMS 244


>dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  607 bits (1566), Expect = e-171
 Identities = 292/456 (64%), Positives = 371/456 (81%)
 Frame = -3

Query: 1555 RKFDKAVGVLEMLEKHGDPDVFAYNAVISGFYKAGRLDSAHQVLDRMKNRGLAPNVVTYN 1376
            R   KAV V+E+LEK G PDVFAYNA+I+GF K  R+D A +VLDRM+++  +P+ VTYN
Sbjct: 138  RNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN 197

Query: 1375 ILVGSLCSNGELGLAMKVVNQLLLKDNCKPNAITYKILMEATLLEGGVDDAMKLLDDMLS 1196
            I++GSLCS G+L LA+KV+NQLL  DNC+P  ITY IL+EAT+LEGGVD+A+KL+D+MLS
Sbjct: 198  IMIGSLCSRGKLDLALKVLNQLL-SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256

Query: 1195 SGIQPDMFIYNAIVRVMCRKGLVGRAFELIRSISSKGYAPDVKSYNLLLRGLLNQGKWEE 1016
             G++PDMF YN I+R MC++G+V RAFE++R++  KG  PDV SYN+LLR LLNQGKWEE
Sbjct: 257  RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEE 316

Query: 1015 GQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKAMKEKGLTPNAYCYDPLIA 836
            G+ LM+ M S+ C+PNV TY++LI++LCRDGK+EEA+ LLK MKEKGLTP+AY YDPLIA
Sbjct: 317  GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376

Query: 835  AFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKADEALNVFEKLGEVGCPP 656
            AFC+E R+D AIEFL++MISDG LPDIV YN +LA+LC+NGKAD+AL +F KLGEVGC P
Sbjct: 377  AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436

Query: 655  NASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCSDAMVDQAIGLL 476
            N+SSYN M SALW+ G KIRAL M+LEM+S G+DPD ITYN+++SCLC + MVD+A  LL
Sbjct: 437  NSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELL 496

Query: 475  VDMESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETTYTSLVKGIIYA 296
            VDM S E  P+V++YNIVLLG C+ HRI DAI VL +MV  GCRPNETTYT L++GI +A
Sbjct: 497  VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFA 556

Query: 295  GWPNDAMELAISLVSMKAIPQHTLKRLFTIVPLPDV 188
            G+  +AMELA  LV + AI +++ KRL    PL +V
Sbjct: 557  GYRAEAMELANDLVRIDAISEYSFKRLHRTFPLLNV 592



 Score =  167 bits (423), Expect = 7e-39
 Identities = 96/326 (29%), Positives = 155/326 (47%), Gaps = 34/326 (10%)
 Frame = -3

Query: 1144 CRKGLVGRAFELIRSISSKGY----------------------------------APDVK 1067
            CR G    +  L+ ++  KGY                                   PDV 
Sbjct: 100  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 1066 SYNLLLRGLLNQGKWEEGQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKAM 887
            +YN L+ G     + ++   ++  M SK   P+  TYN++I SLC  GK++ A+ +L  +
Sbjct: 160  AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 886  KEKGLTPNAYCYDPLIAAFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKA 707
                  P    Y  LI A   E  VD A++ +D M+S G  PD+  YN I+  +C+ G  
Sbjct: 220  LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 706  DEALNVFEKLGEVGCPPNASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNAL 527
            D A  +   L   G  P+  SYNI+L AL N G      +++ +M S+  DP+V+TY+ L
Sbjct: 280  DRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339

Query: 526  MSCLCSDAMVDQAIGLLVDMESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGC 347
            ++ LC D  +++A+ LL  M+     P   SY+ ++   CR  R++ AIE L  M+  GC
Sbjct: 340  ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 399

Query: 346  RPNETTYTSLVKGIIYAGWPNDAMEL 269
             P+   Y +++  +   G  + A+E+
Sbjct: 400  LPDIVNYNTVLATLCKNGKADQALEI 425


>ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g04760, chloroplastic; Flags: Precursor
            gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein
            [Arabidopsis thaliana] gi|15810359|gb|AAL07067.1| unknown
            protein [Arabidopsis thaliana] gi|22136960|gb|AAM91709.1|
            unknown protein [Arabidopsis thaliana]
            gi|332640611|gb|AEE74132.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  607 bits (1566), Expect = e-171
 Identities = 292/456 (64%), Positives = 371/456 (81%)
 Frame = -3

Query: 1555 RKFDKAVGVLEMLEKHGDPDVFAYNAVISGFYKAGRLDSAHQVLDRMKNRGLAPNVVTYN 1376
            R   KAV V+E+LEK G PDVFAYNA+I+GF K  R+D A +VLDRM+++  +P+ VTYN
Sbjct: 138  RNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN 197

Query: 1375 ILVGSLCSNGELGLAMKVVNQLLLKDNCKPNAITYKILMEATLLEGGVDDAMKLLDDMLS 1196
            I++GSLCS G+L LA+KV+NQLL  DNC+P  ITY IL+EAT+LEGGVD+A+KL+D+MLS
Sbjct: 198  IMIGSLCSRGKLDLALKVLNQLL-SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256

Query: 1195 SGIQPDMFIYNAIVRVMCRKGLVGRAFELIRSISSKGYAPDVKSYNLLLRGLLNQGKWEE 1016
             G++PDMF YN I+R MC++G+V RAFE++R++  KG  PDV SYN+LLR LLNQGKWEE
Sbjct: 257  RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEE 316

Query: 1015 GQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKAMKEKGLTPNAYCYDPLIA 836
            G+ LM+ M S+ C+PNV TY++LI++LCRDGK+EEA+ LLK MKEKGLTP+AY YDPLIA
Sbjct: 317  GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376

Query: 835  AFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKADEALNVFEKLGEVGCPP 656
            AFC+E R+D AIEFL++MISDG LPDIV YN +LA+LC+NGKAD+AL +F KLGEVGC P
Sbjct: 377  AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436

Query: 655  NASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNALMSCLCSDAMVDQAIGLL 476
            N+SSYN M SALW+ G KIRAL M+LEM+S G+DPD ITYN+++SCLC + MVD+A  LL
Sbjct: 437  NSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELL 496

Query: 475  VDMESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGCRPNETTYTSLVKGIIYA 296
            VDM S E  P+V++YNIVLLG C+ HRI DAI VL +MV  GCRPNETTYT L++GI +A
Sbjct: 497  VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFA 556

Query: 295  GWPNDAMELAISLVSMKAIPQHTLKRLFTIVPLPDV 188
            G+  +AMELA  LV + AI +++ KRL    PL +V
Sbjct: 557  GYRAEAMELANDLVRIDAISEYSFKRLHRTFPLLNV 592



 Score =  171 bits (433), Expect = 5e-40
 Identities = 97/326 (29%), Positives = 156/326 (47%), Gaps = 34/326 (10%)
 Frame = -3

Query: 1144 CRKGLVGRAFELIRSISSKGY----------------------------------APDVK 1067
            CR G    +  L+ ++  KGY                                   PDV 
Sbjct: 100  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 1066 SYNLLLRGLLNQGKWEEGQNLMSDMVSKGCEPNVFTYNVLISSLCRDGKVEEAVGLLKAM 887
            +YN L+ G     + ++   ++  M SK   P+  TYN++I SLC  GK++ A+ +L  +
Sbjct: 160  AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 886  KEKGLTPNAYCYDPLIAAFCKESRVDSAIEFLDSMISDGRLPDIVIYNRILASLCRNGKA 707
                  P    Y  LI A   E  VD A++ +D M+S G  PD+  YN I+  +C+ G  
Sbjct: 220  LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 706  DEALNVFEKLGEVGCPPNASSYNIMLSALWNIGHKIRALEMVLEMLSKGVDPDVITYNAL 527
            D A  +   L   GC P+  SYNI+L AL N G      +++ +M S+  DP+V+TY+ L
Sbjct: 280  DRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339

Query: 526  MSCLCSDAMVDQAIGLLVDMESSECKPTVISYNIVLLGLCRVHRINDAIEVLAAMVDKGC 347
            ++ LC D  +++A+ LL  M+     P   SY+ ++   CR  R++ AIE L  M+  GC
Sbjct: 340  ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 399

Query: 346  RPNETTYTSLVKGIIYAGWPNDAMEL 269
             P+   Y +++  +   G  + A+E+
Sbjct: 400  LPDIVNYNTVLATLCKNGKADQALEI 425