BLASTX nr result
ID: Glycyrrhiza24_contig00019248
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00019248
(333 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003611862.1| Pentatricopeptide repeat-containing protein ... 201 4e-50
ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containi... 194 8e-48
ref|XP_002522388.1| pentatricopeptide repeat-containing protein,... 156 2e-36
ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containi... 151 6e-35
emb|CBI38358.3| unnamed protein product [Vitis vinifera] 151 6e-35
>ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 663
Score = 201 bits (512), Expect = 4e-50
Identities = 94/110 (85%), Positives = 105/110 (95%)
Frame = -2
Query: 332 DNNITMSVTLCNSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIE 153
DNNIT+S TLCN++IDMYAKCGAL TAMD+FFGMPEKNAVSWNVIIGALALHG G+EAIE
Sbjct: 395 DNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIE 454
Query: 152 MFEKMQASGLCPDEITFTGLLSACSHSGLVDMGRYYFDMMSSTFGISPDV 3
MFEKMQASG+CPDEITFTGLLSACSHSGLVD G++YF++M+ TFGISPDV
Sbjct: 455 MFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDV 504
Score = 68.6 bits (166), Expect = 5e-10
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = -2
Query: 299 NSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIEMFEKMQASGLC 120
N+++++Y CG + +A +F + E+ VSWN +I + G EA+ MF +MQ GL
Sbjct: 173 NAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLE 232
Query: 119 PDEITFTGLLSACSHSGLVDMGRY 48
PD T GLLS + G D+GR+
Sbjct: 233 PDVFTLVGLLSVSTKHGNFDLGRF 256
Score = 64.7 bits (156), Expect = 7e-09
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = -2
Query: 332 DNNITMSVTLCNSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIE 153
D + V +I+ YA G + A++ F MP KN VSWN II G EA++
Sbjct: 294 DQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVD 353
Query: 152 MFEKMQASGLCPDEITFTGLLSACSHSGLVDMGR----YYFD 39
+F +M SG+ ++ T +LS+CSH G + +G+ Y FD
Sbjct: 354 LFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFD 395
>ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 194 bits (492), Expect = 8e-48
Identities = 96/110 (87%), Positives = 100/110 (90%)
Frame = -2
Query: 332 DNNITMSVTLCNSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIE 153
DN IT+SVTLCNSLIDMYAKCGAL TA+DIFFGMPEKN VSWNVIIGALALHG G EAIE
Sbjct: 398 DNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIE 457
Query: 152 MFEKMQASGLCPDEITFTGLLSACSHSGLVDMGRYYFDMMSSTFGISPDV 3
MF+ MQASGL PDEITFTGLLSACSHSGLVDMGRYYFD+M STF ISP V
Sbjct: 458 MFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGV 507
Score = 73.9 bits (180), Expect = 1e-11
Identities = 37/94 (39%), Positives = 54/94 (57%)
Frame = -2
Query: 332 DNNITMSVTLCNSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIE 153
D + V S+++ YA G + A+ IF MP KN VSWN II L G EA+E
Sbjct: 297 DQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVE 356
Query: 152 MFEKMQASGLCPDEITFTGLLSACSHSGLVDMGR 51
+F +M SG+ PD+ T +LS CS++G + +G+
Sbjct: 357 LFHRMCISGVMPDDATLVSILSCCSNTGDLALGK 390
>ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538466|gb|EEF40072.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 472
Score = 156 bits (394), Expect = 2e-36
Identities = 76/98 (77%), Positives = 83/98 (84%)
Frame = -2
Query: 314 SVTLCNSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIEMFEKMQ 135
SVTLCNSLIDMYAKCGAL A+D+F MP KN VSWNVIIGALALHG G EA+E+F KMQ
Sbjct: 355 SVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQ 414
Query: 134 ASGLCPDEITFTGLLSACSHSGLVDMGRYYFDMMSSTF 21
A+G+ PDEITF GLLSACSHSGLVD G YYFD MSS +
Sbjct: 415 AAGVWPDEITFMGLLSACSHSGLVDSGLYYFDKMSSIY 452
Score = 66.6 bits (161), Expect = 2e-09
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 31/123 (25%)
Frame = -2
Query: 299 NSLIDMYAKCGALLTAMDIFFGMP-------------------------------EKNAV 213
N+LIDMYAKCGAL+ A +F MP EKN V
Sbjct: 228 NALIDMYAKCGALVLAERVFQQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVV 287
Query: 212 SWNVIIGALALHGSGREAIEMFEKMQASGLCPDEITFTGLLSACSHSGLVDMGRYYFDMM 33
SWN +I + G REA+++F +M + + P+E T +LSAC G + MG+ + +
Sbjct: 288 SWNSMISSYVQGGQCREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYI 347
Query: 32 SST 24
T
Sbjct: 348 CGT 350
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = -2
Query: 299 NSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIEMFEKMQASGLC 120
N LI+ Y CG + A +F M E++ VSWN +IG + G +E +F++M+ G
Sbjct: 127 NGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMREIGTE 186
Query: 119 PDEITFTGLLSACSHSGLVDMGRY 48
D+ T LL CS +++GR+
Sbjct: 187 ADDFTLVNLLLVCSRRCDINLGRF 210
>ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 151 bits (381), Expect = 6e-35
Identities = 74/109 (67%), Positives = 84/109 (77%)
Frame = -2
Query: 329 NNITMSVTLCNSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIEM 150
N VTL NSLIDMYAKCG ++TA+DIF MP KN VSWNVIIGALALHG G EAI++
Sbjct: 350 NKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKL 409
Query: 149 FEKMQASGLCPDEITFTGLLSACSHSGLVDMGRYYFDMMSSTFGISPDV 3
FE+MQA G PDEIT TGLLSACSHSGLVDMG YYFD M + + ++
Sbjct: 410 FEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREI 458
Score = 73.9 bits (180), Expect = 1e-11
Identities = 40/99 (40%), Positives = 57/99 (57%)
Frame = -2
Query: 299 NSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIEMFEKMQASGLC 120
N+LI +Y CG + A +F + +K VSWN +IG A G+ +EA +F KM+ G+
Sbjct: 127 NALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGME 186
Query: 119 PDEITFTGLLSACSHSGLVDMGRYYFDMMSSTFGISPDV 3
PD TF LLS CS S +D+GRY + T G+ D+
Sbjct: 187 PDGFTFVNLLSVCSQSRDLDLGRYVHFCIEIT-GVKIDI 224
Score = 73.2 bits (178), Expect = 2e-11
Identities = 40/105 (38%), Positives = 57/105 (54%)
Frame = -2
Query: 332 DNNITMSVTLCNSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIE 153
D +V S+I YA+ G++ A IF MP KN VSWN +I G REA++
Sbjct: 248 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALD 307
Query: 152 MFEKMQASGLCPDEITFTGLLSACSHSGLVDMGRYYFDMMSSTFG 18
+F KM+ S + PDE T +L+ACS G + MG+ + + S G
Sbjct: 308 LFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKG 352
>emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 151 bits (381), Expect = 6e-35
Identities = 74/109 (67%), Positives = 84/109 (77%)
Frame = -2
Query: 329 NNITMSVTLCNSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIEM 150
N VTL NSLIDMYAKCG ++TA+DIF MP KN VSWNVIIGALALHG G EAI++
Sbjct: 283 NKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKL 342
Query: 149 FEKMQASGLCPDEITFTGLLSACSHSGLVDMGRYYFDMMSSTFGISPDV 3
FE+MQA G PDEIT TGLLSACSHSGLVDMG YYFD M + + ++
Sbjct: 343 FEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREI 391
Score = 73.2 bits (178), Expect = 2e-11
Identities = 40/105 (38%), Positives = 57/105 (54%)
Frame = -2
Query: 332 DNNITMSVTLCNSLIDMYAKCGALLTAMDIFFGMPEKNAVSWNVIIGALALHGSGREAIE 153
D +V S+I YA+ G++ A IF MP KN VSWN +I G REA++
Sbjct: 181 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALD 240
Query: 152 MFEKMQASGLCPDEITFTGLLSACSHSGLVDMGRYYFDMMSSTFG 18
+F KM+ S + PDE T +L+ACS G + MG+ + + S G
Sbjct: 241 LFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKG 285