BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00018802
         (626 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    96   4e-18
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...    92   6e-17
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    89   6e-16
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]               84   2e-14
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    84   2e-14

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
 Frame = +2

Query: 17   GEKVAWKLTADGGFSNASAYASLLNQ-GLRLQNAPYKN-IWNWKGPERGRLHLWKLAQEA 190
            G++++WK T DG F+  SAY+ L    G R     + N IW    PER R+ +W ++Q  
Sbjct: 867  GDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNV 926

Query: 191  LITNSWHKNRLLSDSDLCPICGVQEESVLHVVRDCQRMQQVWTKLADGVVPQNFFVEDIN 370
            ++TN     R LS++ +C +C   EE++LHV+RDC  M+ +W +L        FF + + 
Sbjct: 927  IMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLL 986

Query: 371  LWLKMNLNGTVCRWGIDWPLIFGTTTLLAWQVRNELIFQQKNINVEQL 514
             WL  N++      GI WP +FG     AW+ R   +F ++ I  ++L
Sbjct: 987  EWLFTNMDPVK---GI-WPTLFGMGIWWAWKWRCCDVFGERKICRDRL 1030


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 676

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
 Frame = +2

Query: 2   GGDRGGE-KVAWKLTADGGFSNASAYA--SLLNQGLRLQNAPYKNIWNWKGPERGRLHLW 172
           GG  G E K++W  T +G F+ +SAY   S+     +  +  +  +W    PER R+ LW
Sbjct: 302 GGCYGVEDKMSWVGTENGRFTVSSAYLIQSVDEISKQCMSRFFDRVWRVMVPERARIFLW 361

Query: 173 KLAQEALITNSWHKNRLLSDSDLCPICGVQEESVLHVVRDCQRMQQVWTKLADGVVPQNF 352
            +  + ++TN+    R ++DSD+CP+C    ES++HV+RDC  M  +W ++   +  + F
Sbjct: 362 LVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRF 421

Query: 353 FVEDINLWLKMNLNGTVCRWGIDWPLIFGTTTLLAWQVRNELIF 484
           F   +  W+  NL          WP +F  T    W+ R   +F
Sbjct: 422 FETSLLEWMYGNLKERSDSERRSWPTLFALTVWWGWKWRCGYVF 465


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
 Frame = +2

Query: 14  GGEKVAWKLTADGGFSNASAYASLLNQGLRLQNAPYKNIWNWKGPERGRLHLWKLAQEAL 193
           G + + W  T    F+  SAY +L  +        +K +WNWKGP R +  +W  A   +
Sbjct: 430 GPDTIGWGGTNTLKFTVQSAY-NLQQENPFAVGGDWKTLWNWKGPHRIQTFIWLAAHGRI 488

Query: 194 ITNSWHKNRLLSDSDLCPICGVQEESVLHVVRDCQRMQQVWTKLADGVVPQNFFVEDINL 373
           +TN       +  S  CP C  ++E+V+HV+RDC    QVW +L       NFF  D   
Sbjct: 489 LTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRLIPHNYITNFFSFDCRE 548

Query: 374 WLKMNLNGTVCRWGI-----DWPLIFGTTTLLAWQVRNELIFQ 487
           W+  NLN    + GI      W   F TT    W  RN+ IF+
Sbjct: 549 WVFNNLN----KKGIGDNPATWQTTFMTTCWYLWNWRNKSIFE 587


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
 Frame = +2

Query: 20  EKVAWKLTADGGFSNASAYASL-LNQGLRLQNAPYKN-IWNWKGPERGRLHLWKLAQEAL 193
           ++++WK + DG FS  SAY  L +++  R   A + N +W  + PER +  LW +  +A+
Sbjct: 362 DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAV 421

Query: 194 ITNSWHKNRLLSDSDLCPICGVQEESVLHVVRDCQRMQQVWTKLADGVVPQNFFVEDINL 373
           +T      R LS S++C +C    ES+LHV+RDC     +W ++      Q FF + +  
Sbjct: 422 MTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFE 481

Query: 374 WLKMNLNGTVCRWGIDWPLIFGTTTLLAWQVRNELIF 484
           WL  NL        I W  IF       W+ R   IF
Sbjct: 482 WLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIF 518


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
 Frame = +2

Query: 20  EKVAWKLTADGGFSNASAYASL-LNQGLRLQNAPYKN-IWNWKGPERGRLHLWKLAQEAL 193
           ++++WK + DG FS  SAY  L +++  R   A + N +W  + PER +  LW +  +A+
Sbjct: 253 DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAV 312

Query: 194 ITNSWHKNRLLSDSDLCPICGVQEESVLHVVRDCQRMQQVWTKLADGVVPQNFFVEDINL 373
           +T      R LS S++C +C    ES+LHV+RDC     +W ++      Q FF + +  
Sbjct: 313 MTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFE 372

Query: 374 WLKMNLNGTVCRWGIDWPLIFGTTTLLAWQVRNELIF 484
           WL  NL        I W  IF       W+ R   IF
Sbjct: 373 WLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIF 409