BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00018785
         (747 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...   101   1e-19
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...   100   4e-19
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    99   7e-19
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]               98   2e-18
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    98   2e-18

>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score =  101 bits (252), Expect = 1e-19
 Identities = 66/188 (35%), Positives = 95/188 (50%)
 Frame = -2

Query: 566 PERYRVFLWKLSQDTIVTNLFRFKRGIAESSLCPVCASGEESILHLLRDYDLANQVWLYL 387
           PER RVFLW + Q  I+TN+ R++R ++++ +C +C  GEE+ILH+LRD      +W  L
Sbjct: 3   PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62

Query: 386 SENRINLGFYSEELLPWITLNVKEDMMVRGCQWNLIFVVALLLSWQARNALIFEGKRTNG 207
                   F++  LL WI  N++E    RG  W  +FV+A+   W+ R   IF G   NG
Sbjct: 63  VPRDQIRQFFTASLLEWIYKNLRE----RG-SWPTVFVMAVWWGWKWRCGNIFGG---NG 114

Query: 206 VEVGKKAICQAAAIQSCHPDRIGLGKLSRHSTPMGHIRWVAPESDAVKINCDGVVTCFGE 27
               +    +  A +    +    G   R S     + WV+PE   VK+N DG       
Sbjct: 115 KCRDRVKFIKDLAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPG 174

Query: 26  VAAAGGVL 3
            A AGGVL
Sbjct: 175 FATAGGVL 182


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
            transferase, Ribonuclease H fold [Medicago truncatula]
          Length = 729

 Score =  100 bits (248), Expect = 4e-19
 Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 4/197 (2%)
 Frame = -2

Query: 581  WRWSGPERYRVFLWKLSQDTIVTNLFRFKRGIAESSLCPVCASGEESILHLLRDYDLANQ 402
            W W GP R + F+W  +   I+TN  R K G+  S  CP CA  +E+++H+LRD   + Q
Sbjct: 468  WNWKGPHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQ 527

Query: 401  VWLYLSENRINLGFYSEELLPWITLNV-KEDMMVRGCQWNLIFVVALLLSWQARNALIFE 225
            VWL L  +     F+S +   W+  N+ K+ +      W   F+      W  RN  IFE
Sbjct: 528  VWLRLIPHNYITNFFSFDCREWVFNNLNKKGIGDNPATWQTTFMTTCWYLWNWRNKSIFE 587

Query: 224  ---GKRTNGVEVGKKAICQAAAIQSCHPDRIGLGKLSRHSTPMGHIRWVAPESDAVKINC 54
                + +N   V +K   +         D   L   S H     +I W+ P    VK+NC
Sbjct: 588  IGFQRPSNPTLVIQKFTREI-------EDNTKLVHKSSHQKETIYIGWMRPPFGWVKLNC 640

Query: 53   DGVVTCFGEVAAAGGVL 3
            DG     G +A  GG+L
Sbjct: 641  DGAWKGSGTLAGCGGLL 657


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 99.4 bits (246), Expect = 7e-19
 Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 14/211 (6%)
 Frame = -2

Query: 593  YNLAWRWSGPERYRVFLWKLSQDTIVTNLFRFKRGIAESSLCPVCASGEESILHLLRDYD 414
            +N  W+   PER RVF+W +SQ+ I+TN+ R +R ++E+++C VC   EE+ILH+LRD  
Sbjct: 903  FNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCP 962

Query: 413  LANQVWLYLSENRINLGFYSEELLPWITLNVKEDMMVRGCQWNLIFVVALLLSWQARNAL 234
                +W  L   R +  F+S+ LL W+  N+     V+G  W  +F + +  +W+ R   
Sbjct: 963  AMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDP---VKGI-WPTLFGMGIWWAWKWRCCD 1018

Query: 233  IFEGKRTNGVEVGKKAICQ---------AAAIQSCHPDRIGLGKLSRHSTPMG-----HI 96
            +F          G++ IC+         A  ++  H   +G       + P G      I
Sbjct: 1019 VF----------GERKICRDRLKFIKDMAEEVRRVHVGAVG-------NRPNGVRVERMI 1061

Query: 95   RWVAPESDAVKINCDGVVTCFGEVAAAGGVL 3
            RW  P    VKI  DG       +AAAGG +
Sbjct: 1062 RWQVPSDGWVKITTDGASRGNHGLAAAGGAI 1092


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 61/197 (30%), Positives = 94/197 (47%)
 Frame = -2

Query: 593 YNLAWRWSGPERYRVFLWKLSQDTIVTNLFRFKRGIAESSLCPVCASGEESILHLLRDYD 414
           +N  W+   PER + FLW +    ++T   R +R ++ S++C VC  G ES+LH+LRD  
Sbjct: 397 FNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCP 456

Query: 413 LANQVWLYLSENRINLGFYSEELLPWITLNVKEDMMVRGCQWNLIFVVALLLSWQARNAL 234
               +W+ +   R   GF+S+ L  W+  N+ +        W+ IF V +   W+ R   
Sbjct: 457 AQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGN 516

Query: 233 IFEGKRTNGVEVGKKAICQAAAIQSCHPDRIGLGKLSRHSTPMGHIRWVAPESDAVKINC 54
           IF G+ T   +  K     A  +   H   + +G        M  I WV+P    VK+N 
Sbjct: 517 IF-GENTKCRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERM--IGWVSPCVGWVKVNT 573

Query: 53  DGVVTCFGEVAAAGGVL 3
           DG       +A+AGGVL
Sbjct: 574 DGASRGNPGLASAGGVL 590


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 61/197 (30%), Positives = 94/197 (47%)
 Frame = -2

Query: 593 YNLAWRWSGPERYRVFLWKLSQDTIVTNLFRFKRGIAESSLCPVCASGEESILHLLRDYD 414
           +N  W+   PER + FLW +    ++T   R +R ++ S++C VC  G ES+LH+LRD  
Sbjct: 288 FNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCP 347

Query: 413 LANQVWLYLSENRINLGFYSEELLPWITLNVKEDMMVRGCQWNLIFVVALLLSWQARNAL 234
               +W+ +   R   GF+S+ L  W+  N+ +        W+ IF V +   W+ R   
Sbjct: 348 AQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGN 407

Query: 233 IFEGKRTNGVEVGKKAICQAAAIQSCHPDRIGLGKLSRHSTPMGHIRWVAPESDAVKINC 54
           IF G+ T   +  K     A  +   H   + +G        M  I WV+P    VK+N 
Sbjct: 408 IF-GENTKCRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERM--IGWVSPCVGWVKVNT 464

Query: 53  DGVVTCFGEVAAAGGVL 3
           DG       +A+AGGVL
Sbjct: 465 DGASRGNPGLASAGGVL 481