BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00018647
         (930 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago t...   318   1e-84
ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containi...   317   3e-84
ref|XP_002532711.1| pentatricopeptide repeat-containing protein,...   249   8e-64
ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containi...   244   2e-62
ref|NP_191302.2| pentatricopeptide repeat-containing protein [Ar...   221   2e-55

>ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355483916|gb|AES65119.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 874

 Score =  318 bits (815), Expect = 1e-84
 Identities = 172/262 (65%), Positives = 188/262 (71%), Gaps = 1/262 (0%)
 Frame = +2

Query: 143 RSPSAWIDHLRFQAQSSS-FHEAISTYTDMVAAGVTPDNFAFPAVLKAXXXXXXXXXXXX 319
           R PS W+ HLR Q QSSS FH+AISTYT+MV AGV PDNFAFPAVLKA            
Sbjct: 47  RLPSEWVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKA------------ 94

Query: 320 XXXXXXXXXXXXXXXXXXAAGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGD 499
                              AG+ DLNLGKQ+HAHV KFG              MYGKCGD
Sbjct: 95  ------------------TAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVN-MYGKCGD 135

Query: 500 LDGARHVFDKIPNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHA 679
           +D AR VFD+I NRDDVSWNSMI A CRFE+W+L++HL R ML ENVGPTSFTLVS+AHA
Sbjct: 136 IDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHA 195

Query: 680 CSNLRDGLRLGKQVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDL 859
           CSNL +GL LGKQVHA+ LRNGD R TFTNNALVTMYAKLGRV EAK LF+ FDD  KDL
Sbjct: 196 CSNLINGLLLGKQVHAFVLRNGDWR-TFTNNALVTMYAKLGRVYEAKTLFDVFDD--KDL 252

Query: 860 VYWNTVISSLSQNDRFEEALLY 925
           V WNT+ISSLSQNDRFEEALLY
Sbjct: 253 VSWNTIISSLSQNDRFEEALLY 274



 Score = 90.1 bits (222), Expect = 7e-16
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 1/180 (0%)
 Frame = +2

Query: 383 VHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNS 562
           ++ L LGKQ+HA V++ G              MY K G +  A+ +FD   ++D VSWN+
Sbjct: 200 INGLLLGKQVHAFVLRNGDWRTFTNNALVT--MYAKLGRVYEAKTLFDVFDDKDLVSWNT 257

Query: 563 MIAATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHACSNLRDGLRLGKQVHAYTLRN 742
           +I++  + ++++ +L  L  ML   V P   TL S+  ACS+L + L  GK++HA+ L N
Sbjct: 258 IISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHL-EMLGCGKEIHAFVLMN 316

Query: 743 GDM-RTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQNDRFEEAL 919
            D+   +F   ALV MY    + ++ + +F+    +   +  WN +I+   +N+   EA+
Sbjct: 317 NDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRT--IAVWNAMIAGYVRNEFDYEAI 374



 Score = 73.6 bits (179), Expect = 6e-11
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
 Frame = +2

Query: 410 IHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNSMIAATCRFE 589
           IH+ V+K+G              MY + G ++ AR +F  +  +D VSWN+MI       
Sbjct: 412 IHSCVVKWGFEKDKYVQNALMD-MYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCG 470

Query: 590 KWDLSLHLLRHM--------------LSEN----VGPTSFTLVSIAHACSNLRDGLRLGK 715
           + D +L+LL  M                +N    + P S TL+++   C+ L   L  GK
Sbjct: 471 RHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALA-ALGKGK 529

Query: 716 QVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQ 895
           ++HAY ++    +     +ALV MYAK G ++ ++ +F      V++++ WN +I +   
Sbjct: 530 EIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQM--SVRNVITWNVLIMAYGM 587

Query: 896 NDRFEEAL 919
           + + EEAL
Sbjct: 588 HGKGEEAL 595



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 8/186 (4%)
 Frame = +2

Query: 377  AGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSW 556
            A +  L  GK+IHA+ +K                MY KCG L+ +R VF+++  R+ ++W
Sbjct: 520  AALAALGKGKEIHAYAVK-QMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITW 578

Query: 557  NSMIAATCRFEKWDLSLHLLRHMLSE-----NVGPTSFTLVSIAHACSN---LRDGLRLG 712
            N +I A     K + +L L R M+ E      + P   T ++I  + S+   + +GL L 
Sbjct: 579  NVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNL- 637

Query: 713  KQVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLS 892
               +    ++G   T+     LV +  + G+++EA  L  +    +K +  W++++ +  
Sbjct: 638  --FYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACK 695

Query: 893  QNDRFE 910
             +   E
Sbjct: 696  IHQNLE 701


>ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  317 bits (811), Expect = 3e-84
 Identities = 181/304 (59%), Positives = 197/304 (64%), Gaps = 1/304 (0%)
 Frame = +2

Query: 17   TQLLLPFTSSLQNHTLXXXXXXXXXXXXXXXXXXXXXXXXXXRSPSAWIDHLRFQAQSSS 196
            TQ  LP+ SSLQ H L                          RSPS WID LR Q  SSS
Sbjct: 263  TQPPLPYPSSLQTHPLTLTLPTPPPTTVER------------RSPSQWIDLLRSQTHSSS 310

Query: 197  FHEAISTYTDMVAAGVTPDNFAFPAVLKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 376
            F +AISTY  M+AA   PDNFAFPAVLKA                              A
Sbjct: 311  FRDAISTYAAMLAAPAPPDNFAFPAVLKA------------------------------A 340

Query: 377  AGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXX-MYGKCGDLDGARHVFDKIPNRDDVS 553
            A VHDL LGKQIHAHV KFGH              MYGKCGDL  AR VFD IP+RD VS
Sbjct: 341  AAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVS 400

Query: 554  WNSMIAATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHACSNLRDGLRLGKQVHAYT 733
            WNSMIA  CRFE+W+LSLHL R MLSENV PTSFTLVS+AHACS++R G+RLGKQVHAYT
Sbjct: 401  WNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYT 460

Query: 734  LRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQNDRFEE 913
            LRNGD+R T+TNNALVTMYA+LGRV++AKALF  FD   KDLV WNTVISSLSQNDRFEE
Sbjct: 461  LRNGDLR-TYTNNALVTMYARLGRVNDAKALFGVFDG--KDLVSWNTVISSLSQNDRFEE 517

Query: 914  ALLY 925
            AL+Y
Sbjct: 518  ALMY 521



 Score = 91.7 bits (226), Expect = 2e-16
 Identities = 51/177 (28%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
 Frame = +2

Query: 392 LNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNSMIA 571
           + LGKQ+HA+ ++ G              MY + G ++ A+ +F     +D VSWN++I+
Sbjct: 450 VRLGKQVHAYTLRNGDLRTYTNNALVT--MYARLGRVNDAKALFGVFDGKDLVSWNTVIS 507

Query: 572 ATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHACSNLRDGLRLGKQVHAYTLRNGDM 751
           +  + ++++ +L  +  M+ + V P   TL S+  ACS L + LR+G+++H Y LRNGD+
Sbjct: 508 SLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQL-ERLRIGREIHCYALRNGDL 566

Query: 752 -RTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQNDRFEEAL 919
              +F   ALV MY    +  + + +F+    +   +  WN +++  ++N+  ++AL
Sbjct: 567 IENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRT--VAVWNALLAGYARNEFDDQAL 621



 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 2/257 (0%)
 Frame = +2

Query: 155  AWIDHLRFQAQSSSFHEAISTYTDMVAAGVTPDNFAFPAVLKAXXXXXXXXXXXXXXXXX 334
            +W   +   +Q+  F EA+     M+  GV PD     +VL A                 
Sbjct: 501  SWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPA----------------- 543

Query: 335  XXXXXXXXXXXXXAAGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGAR 514
                          + +  L +G++IH + ++ G              MY  C      R
Sbjct: 544  -------------CSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGR 590

Query: 515  HVFDKIPNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLSEN-VGPTSFTLVSIAHACSNL 691
             VFD +  R    WN+++A   R E  D +L L   M+SE+   P + T  S+  AC  +
Sbjct: 591  LVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPAC--V 648

Query: 692  RDGLRLGKQ-VHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYW 868
            R  +   K+ +H Y ++ G  +  +  NAL+ MY+++GRV+ +K +F   +   +D+V W
Sbjct: 649  RCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNK--RDIVSW 706

Query: 869  NTVISSLSQNDRFEEAL 919
            NT+I+      R+++AL
Sbjct: 707  NTMITGCIVCGRYDDAL 723



 Score = 73.2 bits (178), Expect = 8e-11
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
 Frame = +2

Query: 410  IHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNSMIAATCRFE 589
            IH +++K G              MY + G ++ ++ +F ++  RD VSWN+MI       
Sbjct: 659  IHGYIVKRGFGKDKYVQNALMD-MYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCG 717

Query: 590  KWDLSLHLLRHMLS-------------ENVG-----PTSFTLVSIAHACSNLRDGLRLGK 715
            ++D +L+LL  M               E+ G     P S TL+++   C+ L   L  GK
Sbjct: 718  RYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALA-ALGKGK 776

Query: 716  QVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQ 895
            ++HAY ++          +ALV MYAK G ++ A  +F+     +++++ WN +I +   
Sbjct: 777  EIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQM--PIRNVITWNVLIMAYGM 834

Query: 896  NDRFEEAL 919
            + + EEAL
Sbjct: 835  HGKGEEAL 842



 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
 Frame = +2

Query: 377  AGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSW 556
            A +  L  GK+IHA+ +K                MY KCG L+ A  VFD++P R+ ++W
Sbjct: 767  AALAALGKGKEIHAYAVK-QKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITW 825

Query: 557  NSMIAATCRFEKWDLSLHLLRHMLS------ENVGPTSFTLVSIAHACSN---LRDGLRL 709
            N +I A     K + +L L R M +      E + P   T ++I  ACS+   + +GL L
Sbjct: 826  NVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHL 885

Query: 710  GKQVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISS 886
                H     +G          LV +  + GRV EA  L N+    +  +  W++++ +
Sbjct: 886  ---FHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGA 941


>ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527557|gb|EEF29678.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 679

 Score =  249 bits (635), Expect = 8e-64
 Identities = 132/262 (50%), Positives = 171/262 (65%), Gaps = 2/262 (0%)
 Frame = +2

Query: 143 RSPSAWIDHLRFQAQSSSFHEAISTYTDMVAAGVTPDNFAFPAVLKAXXXXXXXXXXXXX 322
           RS ++WI+ LRF  +S+ F EAISTY DM+ +GV+PD++AFP VLKA             
Sbjct: 40  RSQASWIESLRFNTRSNLFREAISTYVDMILSGVSPDSYAFPVVLKA------------- 86

Query: 323 XXXXXXXXXXXXXXXXXAAGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDL 502
                              G+ DLNLGKQIHAHV+K+G+              YGKC +L
Sbjct: 87  -----------------VTGLQDLNLGKQIHAHVVKYGYESSSVAIANSLVNFYGKCSEL 129

Query: 503 DGARHVFDKIPNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHAC 682
           D    VFD+I  RD VSWNS+I+A CR ++W+L+L   R ML+E++ P+SFTLVS   AC
Sbjct: 130 DDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPSSFTLVSPVIAC 189

Query: 683 SNLR--DGLRLGKQVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKD 856
           SNLR  +GLRLGKQ+H Y  RNG   +TFTNNAL+TMYA LGR+D+AK LF  F+D  ++
Sbjct: 190 SNLRKHEGLRLGKQIHGYCFRNGHW-STFTNNALMTMYANLGRLDDAKFLFKLFED--RN 246

Query: 857 LVYWNTVISSLSQNDRFEEALL 922
           L+ WNT+ISS SQN+RF EAL+
Sbjct: 247 LISWNTMISSFSQNERFVEALM 268



 Score =  110 bits (274), Expect = 6e-22
 Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 1/178 (0%)
 Frame = +2

Query: 392 LNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNSMIA 571
           L LGKQIH +  + GH             MY   G LD A+ +F    +R+ +SWN+MI+
Sbjct: 198 LRLGKQIHGYCFRNGHWSTFTNNALMT--MYANLGRLDDAKFLFKLFEDRNLISWNTMIS 255

Query: 572 ATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHACSNLRDGLRLGKQVHAYTLRNGDM 751
           +  + E++  +L  LR+M+ E V P   TL S+  ACS L + L  GK++HAY LR+GD+
Sbjct: 256 SFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYL-EMLGTGKEIHAYALRSGDL 314

Query: 752 -RTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQNDRFEEALL 922
              +F  +ALV MY   G+V   + +F+   ++   L  WN +I+  +QN+  E+AL+
Sbjct: 315 IENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGL--WNAMIAGYAQNEHDEKALM 370



 Score = 90.5 bits (223), Expect = 5e-16
 Identities = 67/261 (25%), Positives = 116/261 (44%), Gaps = 1/261 (0%)
 Frame = +2

Query: 143 RSPSAWIDHLRFQAQSSSFHEAISTYTDMVAAGVTPDNFAFPAVLKAXXXXXXXXXXXXX 322
           R+  +W   +   +Q+  F EA+ +   MV  GV PD     +VL A             
Sbjct: 245 RNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPA------------- 291

Query: 323 XXXXXXXXXXXXXXXXXAAGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDL 502
                             + +  L  GK+IHA+ ++ G              MY  CG +
Sbjct: 292 -----------------CSYLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQV 334

Query: 503 DGARHVFDKIPNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLS-ENVGPTSFTLVSIAHA 679
              R VFD I  R    WN+MIA   + E  + +L L   M++   + P + T+ SI  A
Sbjct: 335 GSGRRVFDGILERKTGLWNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPA 394

Query: 680 CSNLRDGLRLGKQVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDL 859
            +   +     + +H Y ++    R  +  NAL+ MY+++ +++ +K +F+S +  V+D+
Sbjct: 395 SARC-ESFFSKESIHGYVIKRDLERDRYVQNALMDMYSRMRKMEISKTIFDSME--VRDI 451

Query: 860 VYWNTVISSLSQNDRFEEALL 922
           V WNT+I+    +  + +ALL
Sbjct: 452 VSWNTMITGYVISGCYNDALL 472



 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
 Frame = +2

Query: 479 MYGKCGDLDGARHVFDKIPNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLSENVG----- 643
           MY +   ++ ++ +FD +  RD VSWN+MI        ++ +L +L  M   N G     
Sbjct: 429 MYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYNDALLMLHEMQHANEGINKHD 488

Query: 644 --------PTSFTLVSIAHACSNLRDGLRLGKQVHAYTLRNGDMRTTFTNNALVTMYAKL 799
                   P S TL+++   C++L   L  GK++HAY +RN         +ALV MYAK 
Sbjct: 489 GDKQACFKPNSITLMTVLPGCASLA-ALAKGKEIHAYAVRNALASEVTVGSALVDMYAKC 547

Query: 800 GRVDEAKALFNSFDDKVKDLVYWNTVISSLSQNDRFEEAL 919
           G ++ ++ +F+     +K+++ WN ++ +   +   EEAL
Sbjct: 548 GCLNLSRRVFDQM--PIKNVITWNVIVMAYGMHGNGEEAL 585


>ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  244 bits (624), Expect = 2e-62
 Identities = 134/263 (50%), Positives = 166/263 (63%), Gaps = 2/263 (0%)
 Frame = +2

Query: 143 RSPSAWIDHLRFQAQSSSFHEAISTYTDMVAAGVTPDNFAFPAVLKAXXXXXXXXXXXXX 322
           RS ++W+D LR + +S+ F EAISTY +M  +G  PDNFAFPAVLKA             
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKA------------- 101

Query: 323 XXXXXXXXXXXXXXXXXAAGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDL 502
                             +G+ DL  G+QIHA  +KFG+             MYGKCG +
Sbjct: 102 -----------------VSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGI 144

Query: 503 DGARHVFDKIPNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHAC 682
                VFD+I +RD VSWNS IAA CRFEKW+ +L   R M  EN+  +SFTLVS+A AC
Sbjct: 145 GDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALAC 204

Query: 683 SNL--RDGLRLGKQVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKD 856
           SNL    GLRLGKQ+H Y+LR GD + TFTNNAL+ MYAKLGRVD++KALF SF D  +D
Sbjct: 205 SNLGVMHGLRLGKQLHGYSLRVGDQK-TFTNNALMAMYAKLGRVDDSKALFESFVD--RD 261

Query: 857 LVYWNTVISSLSQNDRFEEALLY 925
           +V WNT+ISS SQ+DRF EAL +
Sbjct: 262 MVSWNTMISSFSQSDRFSEALAF 284



 Score =  102 bits (255), Expect = 1e-19
 Identities = 60/181 (33%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
 Frame = +2

Query: 383 VHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNS 562
           +H L LGKQ+H + ++ G              MY K G +D ++ +F+   +RD VSWN+
Sbjct: 210 MHGLRLGKQLHGYSLRVGDQKTFTNNALMA--MYAKLGRVDDSKALFESFVDRDMVSWNT 267

Query: 563 MIAATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHACSNLRDGLRLGKQVHAYTLRN 742
           MI++  + +++  +L   R M+ E V     T+ S+  ACS+L + L +GK++HAY LRN
Sbjct: 268 MISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHL-ERLDVGKEIHAYVLRN 326

Query: 743 GDM-RTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQNDRFEEAL 919
            D+   +F  +ALV MY    +V+  + +F+    +  +L  WN +IS  ++N   E+AL
Sbjct: 327 NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIEL--WNAMISGYARNGLDEKAL 384

Query: 920 L 922
           +
Sbjct: 385 I 385



 Score = 90.1 bits (222), Expect = 7e-16
 Identities = 66/261 (25%), Positives = 116/261 (44%), Gaps = 1/261 (0%)
 Frame = +2

Query: 143 RSPSAWIDHLRFQAQSSSFHEAISTYTDMVAAGVTPDNFAFPAVLKAXXXXXXXXXXXXX 322
           R   +W   +   +QS  F EA++ +  MV  GV  D     +VL A             
Sbjct: 260 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPA------------- 306

Query: 323 XXXXXXXXXXXXXXXXXAAGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDL 502
                             + +  L++GK+IHA+V++                MY  C  +
Sbjct: 307 -----------------CSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQV 349

Query: 503 DGARHVFDKIPNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLS-ENVGPTSFTLVSIAHA 679
           +  R VFD I  R    WN+MI+   R    + +L L   M+    + P + T+ S+  A
Sbjct: 350 ESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPA 409

Query: 680 CSNLRDGLRLGKQVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDL 859
           C +  +     + +H Y ++ G     +  NAL+ MY+++G++D ++ +F+S +  V+D 
Sbjct: 410 CVHC-EAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSME--VRDR 466

Query: 860 VYWNTVISSLSQNDRFEEALL 922
           V WNT+I+    + R+  AL+
Sbjct: 467 VSWNTMITGYVLSGRYSNALV 487



 Score = 77.4 bits (189), Expect = 4e-12
 Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
 Frame = +2

Query: 404 KQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNSMIAATCR 583
           + IH + +K G              MY + G +D +  +FD +  RD VSWN+MI     
Sbjct: 420 ESIHGYAVKLGFKEDRYVQNALMD-MYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVL 478

Query: 584 FEKWDLSLHLLRHM-LSENV----------------GPTSFTLVSIAHACSNLRDGLRLG 712
             ++  +L LL  M   EN                  P + TL+++   C+ L   +  G
Sbjct: 479 SGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALA-AIAKG 537

Query: 713 KQVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLS 892
           K++HAY +RN         +ALV MYAK G ++ ++ +FN   +  K+++ WN +I +  
Sbjct: 538 KEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPN--KNVITWNVLIMACG 595

Query: 893 QNDRFEEAL 919
            + + EEAL
Sbjct: 596 MHGKGEEAL 604



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
 Frame = +2

Query: 401  GKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNSMIAATC 580
            GK+IHA+ I+                MY KCG L+ +R VF+++PN++ ++WN +I A  
Sbjct: 537  GKEIHAYAIR-NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACG 595

Query: 581  RFEKWDLSLHLLRHMLSE-----NVGPTSFTLVSIAHACSN---LRDGLRLGKQVHAYTL 736
               K + +L L ++M++E        P   T +++  ACS+   + +GL L    +    
Sbjct: 596  MHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNL---FYRMKH 652

Query: 737  RNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISS 886
             +G   T+     +V +  + G+++EA  L N+   +   +  W++++ +
Sbjct: 653  DHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGA 702



 Score = 59.7 bits (143), Expect = 9e-07
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
 Frame = +2

Query: 533 PNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHACSNLRDGLRLG 712
           P+R   SW   + +  R   +  ++     M      P +F   ++  A S L+D L+ G
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQD-LKTG 111

Query: 713 KQVHAYTLRNGDMRTTFT-NNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSL 889
           +Q+HA  ++ G   ++ T  N LV MY K G + +   +F+   D  +D V WN+ I++L
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITD--RDQVSWNSFIAAL 169

Query: 890 SQNDRFEEAL 919
            + +++E+AL
Sbjct: 170 CRFEKWEQAL 179


>ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
           gi|332646133|gb|AEE79654.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  221 bits (562), Expect = 2e-55
 Identities = 121/263 (46%), Positives = 155/263 (58%), Gaps = 2/263 (0%)
 Frame = +2

Query: 143 RSPSAWIDHLRFQAQSSSFHEAISTYTDMVAAGVTPDNFAFPAVLKAXXXXXXXXXXXXX 322
           RSP  WID LR + +S+   EA+ TY DM+  G+ PDN+AFPA+LKA             
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKA------------- 106

Query: 323 XXXXXXXXXXXXXXXXXAAGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDL 502
                             A + D+ LGKQIHAHV KFG+             +Y KCGD 
Sbjct: 107 -----------------VADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDF 149

Query: 503 DGARHVFDKIPNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHAC 682
                VFD+I  R+ VSWNS+I++ C FEKW+++L   R ML ENV P+SFTLVS+  AC
Sbjct: 150 GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTAC 209

Query: 683 SNL--RDGLRLGKQVHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKD 856
           SNL   +GL +GKQVHAY LR G++  +F  N LV MY KLG++  +K L  SF    +D
Sbjct: 210 SNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGSFGG--RD 266

Query: 857 LVYWNTVISSLSQNDRFEEALLY 925
           LV WNTV+SSL QN++  EAL Y
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEY 289



 Score =  107 bits (267), Expect = 4e-21
 Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 1/178 (0%)
 Frame = +2

Query: 392 LNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNSMIA 571
           L +GKQ+HA+ ++ G              MYGK G L  ++ +      RD V+WN++++
Sbjct: 218 LMMGKQVHAYGLRKGELNSFIINTLVA--MYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 275

Query: 572 ATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHACSNLRDGLRLGKQVHAYTLRNGDM 751
           + C+ E+   +L  LR M+ E V P  FT+ S+  ACS+L + LR GK++HAY L+NG +
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHL-EMLRTGKELHAYALKNGSL 334

Query: 752 -RTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQNDRFEEALL 922
              +F  +ALV MY    +V   + +F+   D+   L  WN +I+  SQN+  +EALL
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL--WNAMIAGYSQNEHDKEALL 390



 Score = 92.0 bits (227), Expect = 2e-16
 Identities = 73/258 (28%), Positives = 111/258 (43%), Gaps = 3/258 (1%)
 Frame = +2

Query: 158 WIDHLRFQAQSSSFHEAISTYTDMVAAGVTPDNFAFPAVLKAXXXXXXXXXXXXXXXXXX 337
           W   L    Q+    EA+    +MV  GV PD F   +VL A                  
Sbjct: 270 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA------------------ 311

Query: 338 XXXXXXXXXXXXAAGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARH 517
                        + +  L  GK++HA+ +K G              MY  C  +   R 
Sbjct: 312 ------------CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 359

Query: 518 VFDKIPNRDDVSWNSMIAATCRFEKWDLSLHLLRHMLSENVG--PTSFTLVSIAHACSNL 691
           VFD + +R    WN+MIA   + E  D    LL   + E+ G    S T+  +  AC  +
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEH-DKEALLLFIGMEESAGLLANSTTMAGVVPAC--V 416

Query: 692 RDGLRLGKQ-VHAYTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYW 868
           R G    K+ +H + ++ G  R  F  N L+ MY++LG++D A  +F   +D  +DLV W
Sbjct: 417 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMED--RDLVTW 474

Query: 869 NTVISSLSQNDRFEEALL 922
           NT+I+    ++  E+ALL
Sbjct: 475 NTMITGYVFSEHHEDALL 492



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
 Frame = +2

Query: 410 IHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSWNSMIAATCRFE 589
           IH  V+K G              MY + G +D A  +F K+ +RD V+WN+MI      E
Sbjct: 427 IHGFVVKRG-LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSE 485

Query: 590 KWDLSLHLLRHMLS-----------ENVGPTSFTLVSIAHACSNLRDGLRLGKQVHAYTL 736
             + +L LL  M +            ++ P S TL++I  +C+ L   L  GK++HAY +
Sbjct: 486 HHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAAL-SALAKGKEIHAYAI 544

Query: 737 RNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQNDRFEEA 916
           +N         +ALV MYAK G +  ++ +F+      K+++ WN +I +   +   +EA
Sbjct: 545 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQ--KNVITWNVIIMAYGMHGNGQEA 602

Query: 917 L 919
           +
Sbjct: 603 I 603



 Score = 68.2 bits (165), Expect = 3e-09
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 3/181 (1%)
 Frame = +2

Query: 377  AGVHDLNLGKQIHAHVIKFGHXXXXXXXXXXXXXMYGKCGDLDGARHVFDKIPNRDDVSW 556
            A +  L  GK+IHA+ IK  +             MY KCG L  +R VFD+IP ++ ++W
Sbjct: 528  AALSALAKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 586

Query: 557  NSMIAATCRFEKWDLSLHLLRHMLSENVGPTSFTLVSIAHACSN---LRDGLRLGKQVHA 727
            N +I A         ++ LLR M+ + V P   T +S+  ACS+   + +GLR+    + 
Sbjct: 587  NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRI---FYV 643

Query: 728  YTLRNGDMRTTFTNNALVTMYAKLGRVDEAKALFNSFDDKVKDLVYWNTVISSLSQNDRF 907
                 G   ++     +V +  + GR+ EA  L N           W++++ +   ++  
Sbjct: 644  MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNL 703

Query: 908  E 910
            E
Sbjct: 704  E 704