BLASTX nr result

ID: Glycyrrhiza24_contig00018597 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00018597
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518495.1| PREDICTED: probable ATP-dependent RNA helica...   135   4e-30
ref|XP_003545153.1| PREDICTED: probable ATP-dependent RNA helica...   124   8e-27
ref|XP_002278608.2| PREDICTED: probable ATP-dependent RNA helica...   119   3e-25
emb|CBI22072.3| unnamed protein product [Vitis vinifera]              119   3e-25
ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|2...   119   3e-25

>ref|XP_003518495.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine
           max]
          Length = 1162

 Score =  135 bits (339), Expect = 4e-30
 Identities = 76/160 (47%), Positives = 105/160 (65%), Gaps = 2/160 (1%)
 Frame = -2

Query: 474 NFSALKDEVYNFEANLSPGECVAVHDLSPKTRFIVGNSGSGIKQKVSVKEIKK-VGTTTK 298
           +F A  DEVY F+A+LS  E   VH ++ K  F   + G G +++V V+++KK V T   
Sbjct: 38  HFRASNDEVYKFDADLSNQERALVHQMALKMGFRSKSYGLGKERRVCVQKMKKKVDTDNG 97

Query: 297 LKNLPHFTFSEKSKQILGGLLMHYPPGDEFWGEITGTSSDS-TKRTEQKEDDFFGRPNMS 121
             +LP FTFS ++K +LG L  HYPPGD    E+ G +SD+ T RT+Q+ DD F RP+M+
Sbjct: 98  FGSLPQFTFSGEAKWVLGDLFAHYPPGDGNSWEMVGENSDTATDRTKQRPDDIFSRPSMT 157

Query: 120 KADVAKQLEDLDARMKNPSYLKPIFEKRSMLPIASFKDVI 1
           KA++A++LE L +RM N S LK I E RS LPI S+KD I
Sbjct: 158 KAEIARRLEALTSRMNNVSNLKQIIEGRSKLPIVSYKDSI 197


>ref|XP_003545153.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine
           max]
          Length = 1164

 Score =  124 bits (311), Expect = 8e-27
 Identities = 73/160 (45%), Positives = 101/160 (63%), Gaps = 3/160 (1%)
 Frame = -2

Query: 471 FSALKDEVYNFEANLSPGECVAVHDLSPKTRFIVGNSGSGIKQKVSVKEIKK-VGTTTKL 295
           F A  DEVY F+A LS  E   VH ++ K  F   + G G +++V V+++KK V T    
Sbjct: 40  FRASNDEVYKFDAGLSNQERALVHQMALKMGFRSKSYGLGKERRVCVQKMKKKVDTDNGF 99

Query: 294 KNLPHFTFSEKSKQILGGLLMHYPPGDEFWGEITGTSSDSTKR--TEQKEDDFFGRPNMS 121
            +LP FTFS ++K +LG L  H+PPG+    E+ G +S+ T    T+Q+  D F RP+M+
Sbjct: 100 GSLPPFTFSGEAKWVLGDLFAHHPPGEGNLWEMVGENSEDTTTDGTKQRPGDIFSRPSMT 159

Query: 120 KADVAKQLEDLDARMKNPSYLKPIFEKRSMLPIASFKDVI 1
           KA++A++LE L +RM N S LK I E RS LPIASFKD I
Sbjct: 160 KAEIARRLEALASRMNNVSNLKQINEGRSKLPIASFKDSI 199


>ref|XP_002278608.2| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Vitis
           vinifera]
          Length = 1231

 Score =  119 bits (297), Expect = 3e-25
 Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
 Frame = -2

Query: 471 FSALKDEVYNFEANLSPGECVAVHDLSPKTRFIVGNSGSGIKQKVSVKEIKKVGTTTKLK 292
           F    +EVY FEANL+  E   VH++  K      +SG G +++VSV + KK   T K +
Sbjct: 34  FRETHNEVYTFEANLTNHERAVVHEVCRKMGMTSKSSGRGSQRRVSVYKTKKKVDTKKEE 93

Query: 291 NLPHFTFSEKSKQILGGLLMHYPPGD-EFWGEITGTSSDSTKRTEQKEDDFFGRPNMSKA 115
             P+  FSE++K++L  L   YPP D E   ++    S  T++   K+DD FGRP+M+KA
Sbjct: 94  GNPYLNFSEEAKEVLLDLFTRYPPDDKEMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKA 153

Query: 114 DVAKQLEDLDARMKNPSYLKPIFEKRSMLPIASFKDVI 1
           ++AK++E L +R++   +L+ I E RS LPIASFKDVI
Sbjct: 154 EIAKKVELLASRIEEDPHLRQITEGRSKLPIASFKDVI 191


>emb|CBI22072.3| unnamed protein product [Vitis vinifera]
          Length = 1190

 Score =  119 bits (297), Expect = 3e-25
 Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
 Frame = -2

Query: 471 FSALKDEVYNFEANLSPGECVAVHDLSPKTRFIVGNSGSGIKQKVSVKEIKKVGTTTKLK 292
           F    +EVY FEANL+  E   VH++  K      +SG G +++VSV + KK   T K +
Sbjct: 34  FRETHNEVYTFEANLTNHERAVVHEVCRKMGMTSKSSGRGSQRRVSVYKTKKKVDTKKEE 93

Query: 291 NLPHFTFSEKSKQILGGLLMHYPPGD-EFWGEITGTSSDSTKRTEQKEDDFFGRPNMSKA 115
             P+  FSE++K++L  L   YPP D E   ++    S  T++   K+DD FGRP+M+KA
Sbjct: 94  GNPYLNFSEEAKEVLLDLFTRYPPDDKEMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKA 153

Query: 114 DVAKQLEDLDARMKNPSYLKPIFEKRSMLPIASFKDVI 1
           ++AK++E L +R++   +L+ I E RS LPIASFKDVI
Sbjct: 154 EIAKKVELLASRIEEDPHLRQITEGRSKLPIASFKDVI 191


>ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|222857018|gb|EEE94565.1|
           predicted protein [Populus trichocarpa]
          Length = 1195

 Score =  119 bits (297), Expect = 3e-25
 Identities = 68/159 (42%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
 Frame = -2

Query: 471 FSALKDEVYNFEANLSPGECVAVHDLSPKTRFIVGNSGSGIKQKVSV-KEIKKVGTTTKL 295
           F A  D+VY FEANLS  +   VH++  K      +SG G +++VSV K  KK+      
Sbjct: 32  FRAAPDQVYTFEANLSNYDRAVVHEVCKKMGMKSKSSGRGGQRRVSVYKNTKKLDDVKGK 91

Query: 294 KNLPHFTFSEKSKQILGGLLMHYPPGDEFWG-EITGTSSDSTKRTEQKEDDFFGRPNMSK 118
           +NL H TFS +SK +LG L  +YPP +  +G E+ G  S +  +T +K+DD F +P+  K
Sbjct: 92  ENLTHLTFSGESKMVLGELFSNYPPEEGGFGAELEGKHSGTAGKTREKKDDIFSKPSRKK 151

Query: 117 ADVAKQLEDLDARMKNPSYLKPIFEKRSMLPIASFKDVI 1
           A++AK++E   +R++    LK I E RS LPIASF DVI
Sbjct: 152 AEIAKKVESFASRIEKDVKLKQIVEGRSKLPIASFMDVI 190


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