BLASTX nr result

ID: Glycyrrhiza24_contig00018435 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00018435
         (538 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003528725.1| PREDICTED: uncharacterized protein LOC100814...   229   3e-58
ref|XP_003550458.1| PREDICTED: uncharacterized protein LOC100791...   222   3e-56
ref|XP_002519367.1| replication factor C / DNA polymerase III ga...   196   1e-48
ref|XP_002328811.1| predicted protein [Populus trichocarpa] gi|2...   192   4e-47
ref|XP_004133740.1| PREDICTED: uncharacterized protein LOC101212...   191   6e-47

>ref|XP_003528725.1| PREDICTED: uncharacterized protein LOC100814391 [Glycine max]
          Length = 1237

 Score =  229 bits (583), Expect = 3e-58
 Identities = 127/186 (68%), Positives = 135/186 (72%), Gaps = 7/186 (3%)
 Frame = -1

Query: 538 TTSINXXXXXXXXXXXXXLPGRQGCGIPCYWSKRK-------GSCCSPSLSDTLRRKGSS 380
           TTS+N             LPGRQGCGIPCYWSKR        GSC SPSLSDTLRRKGSS
Sbjct: 288 TTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSS 347

Query: 379 MFCGSQSIYPXXXXXXXXXXXXXXSLRSAQGVLPLLTNSGDVREGSSMGTGRSYDDDELS 200
           M CGSQ+IYP              SLRSA+GV+PLLTNSGDVREGSS+GTGRS  DDELS
Sbjct: 348 MLCGSQTIYPRHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTGRS--DDELS 405

Query: 199 TNFGELDLEGLSRLDGXXXXXXXXXXSQEGLEIVALNGEGEDDGTPENSRSFSHKYKPLF 20
           TNFGELDLEGLSRLDG          SQEGLEIVALNGEGE DGTPEN+RSFS KY+P+F
Sbjct: 406 TNFGELDLEGLSRLDG--RRWSSSCRSQEGLEIVALNGEGEYDGTPENNRSFSQKYRPMF 463

Query: 19  FGELIG 2
           FGELIG
Sbjct: 464 FGELIG 469


>ref|XP_003550458.1| PREDICTED: uncharacterized protein LOC100791561 [Glycine max]
          Length = 1236

 Score =  222 bits (565), Expect = 3e-56
 Identities = 123/186 (66%), Positives = 132/186 (70%), Gaps = 7/186 (3%)
 Frame = -1

Query: 538 TTSINXXXXXXXXXXXXXLPGRQGCGIPCYWSKRK-------GSCCSPSLSDTLRRKGSS 380
           TTS+N             LPGRQGCGIPCYWSKR        GSC SPSLSDTLRRKGSS
Sbjct: 285 TTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRRMCGSCYSPSLSDTLRRKGSS 344

Query: 379 MFCGSQSIYPXXXXXXXXXXXXXXSLRSAQGVLPLLTNSGDVREGSSMGTGRSYDDDELS 200
           M CGSQSIYP              SLRSA+GV+PLLTNSGDVREGSS+GTG  + DDELS
Sbjct: 345 MLCGSQSIYPTHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTG--WSDDELS 402

Query: 199 TNFGELDLEGLSRLDGXXXXXXXXXXSQEGLEIVALNGEGEDDGTPENSRSFSHKYKPLF 20
           TNFGELDLEGLSRLDG          SQEGLEIVALNGEGE + TPEN+RSFS KY+P+F
Sbjct: 403 TNFGELDLEGLSRLDG--RRWSSSCRSQEGLEIVALNGEGEYESTPENNRSFSQKYRPMF 460

Query: 19  FGELIG 2
           FGEL G
Sbjct: 461 FGELFG 466


>ref|XP_002519367.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis] gi|223541434|gb|EEF42984.1|
           replication factor C / DNA polymerase III gamma-tau
           subunit, putative [Ricinus communis]
          Length = 1270

 Score =  196 bits (499), Expect = 1e-48
 Identities = 108/167 (64%), Positives = 119/167 (71%), Gaps = 7/167 (4%)
 Frame = -1

Query: 481 PGRQGCGIPCYWSKRK-------GSCCSPSLSDTLRRKGSSMFCGSQSIYPXXXXXXXXX 323
           PGRQGCGIPCYWSKR        GSCCSPSLSDT++RKG+SM CG QS+Y          
Sbjct: 309 PGRQGCGIPCYWSKRTPRHRGVCGSCCSPSLSDTIQRKGTSMLCGRQSMYHRRWHSSSVY 368

Query: 322 XXXXXSLRSAQGVLPLLTNSGDVREGSSMGTGRSYDDDELSTNFGELDLEGLSRLDGXXX 143
                S RSAQG+LPLL NS D R GSS+GTG S  DDELSTNFGELDLE LSRLDG   
Sbjct: 369 NKRRISSRSAQGLLPLLANS-DGRGGSSIGTGNS--DDELSTNFGELDLEALSRLDGRRW 425

Query: 142 XXXXXXXSQEGLEIVALNGEGEDDGTPENSRSFSHKYKPLFFGELIG 2
                   Q+GLEIVALNG+GE++GTPEN RS S KYKPLFFGE+IG
Sbjct: 426 SSCRS---QDGLEIVALNGDGEEEGTPENIRSLSQKYKPLFFGEVIG 469


>ref|XP_002328811.1| predicted protein [Populus trichocarpa] gi|222839109|gb|EEE77460.1|
           predicted protein [Populus trichocarpa]
          Length = 1197

 Score =  192 bits (487), Expect = 4e-47
 Identities = 104/168 (61%), Positives = 114/168 (67%), Gaps = 8/168 (4%)
 Frame = -1

Query: 481 PGRQGCGIPCYWSKRK--------GSCCSPSLSDTLRRKGSSMFCGSQSIYPXXXXXXXX 326
           PGRQGCGIPCYWSKR          SCCSPSLSDTLRRKGSSMFCGSQ +Y         
Sbjct: 329 PGRQGCGIPCYWSKRTPRYRGVCGSSCCSPSLSDTLRRKGSSMFCGSQPLYHRRRRSWSI 388

Query: 325 XXXXXXSLRSAQGVLPLLTNSGDVREGSSMGTGRSYDDDELSTNFGELDLEGLSRLDGXX 146
                   R+   +LPLLTNSGD   GSS+GTG S  DDELSTN+GELDLE LSRLDG  
Sbjct: 389 SNKRRIGSRTGHALLPLLTNSGDGIGGSSIGTGLS--DDELSTNYGELDLEALSRLDGRR 446

Query: 145 XXXXXXXXSQEGLEIVALNGEGEDDGTPENSRSFSHKYKPLFFGELIG 2
                    Q+GLEIVALNG+GE++GTPEN  S S KYKP+FF ELIG
Sbjct: 447 WSSCRS---QDGLEIVALNGDGEEEGTPENIGSLSQKYKPVFFSELIG 491


>ref|XP_004133740.1| PREDICTED: uncharacterized protein LOC101212356 [Cucumis sativus]
           gi|449478091|ref|XP_004155220.1| PREDICTED:
           uncharacterized protein LOC101227259 [Cucumis sativus]
          Length = 1267

 Score =  191 bits (485), Expect = 6e-47
 Identities = 109/167 (65%), Positives = 115/167 (68%), Gaps = 7/167 (4%)
 Frame = -1

Query: 481 PGRQGCGIPCYWSKRK-------GSCCSPSLSDTLRRKGSSMFCGSQSIYPXXXXXXXXX 323
           PGRQGCGIPCYWSKR        GSCCSPSLSDTLRRKGSS+  GSQSIY          
Sbjct: 333 PGRQGCGIPCYWSKRTPKHRGICGSCCSPSLSDTLRRKGSSILFGSQSIYSRRKSINSSK 392

Query: 322 XXXXXSLRSAQGVLPLLTNSGDVREGSSMGTGRSYDDDELSTNFGELDLEGLSRLDGXXX 143
                   SA+GVLPLLTNS D   GSS+GTGRS  DDELSTNFGELDLE LSRLDG   
Sbjct: 393 RRFASG--SARGVLPLLTNSADGGVGSSIGTGRS--DDELSTNFGELDLEALSRLDGRRW 448

Query: 142 XXXXXXXSQEGLEIVALNGEGEDDGTPENSRSFSHKYKPLFFGELIG 2
                    EGLEIVALNGE E  GTPE++RSFS KYKP+FF ELIG
Sbjct: 449 SSSCRS--HEGLEIVALNGEVEGGGTPESTRSFSQKYKPMFFNELIG 493


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