BLASTX nr result

ID: Glycyrrhiza24_contig00018117 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00018117
         (452 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003526844.1| PREDICTED: uncharacterized protein LOC100802...    53   8e-13
ref|XP_003525097.1| PREDICTED: RNA-binding protein 39-like [Glyc...    45   1e-09
ref|XP_003602518.1| Splicing factor-like protein [Medicago trunc...    45   4e-09
ref|XP_003602517.1| Splicing factor-like protein [Medicago trunc...    45   4e-09
ref|XP_002278030.1| PREDICTED: RNA-binding protein 39-like [Viti...    43   3e-07

>ref|XP_003526844.1| PREDICTED: uncharacterized protein LOC100802446 [Glycine max]
          Length = 549

 Score = 52.8 bits (125), Expect(2) = 8e-13
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = +1

Query: 307 SERSYRKREEIDEVAEEKRSKRSRGDDEHGS 399
           SERSYRKREEIDE  EE +SKRSRGD+E+GS
Sbjct: 28  SERSYRKREEIDEGIEETKSKRSRGDEENGS 58



 Score = 45.4 bits (106), Expect(2) = 8e-13
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +3

Query: 126 MEFDEYDYLEKAVEEHEDRDSTKKK 200
           M+FDEYDYLEK VEE ED DS++KK
Sbjct: 1   MDFDEYDYLEKTVEEQEDHDSSRKK 25


>ref|XP_003525097.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
          Length = 554

 Score = 45.1 bits (105), Expect(2) = 1e-09
 Identities = 21/37 (56%), Positives = 30/37 (81%), Gaps = 2/37 (5%)
 Frame = +1

Query: 292 DSGDRSERSYRKREEIDEV--AEEKRSKRSRGDDEHG 396
           D  D+SERSYRK  ++D+   A++++SKRSRGDDE+G
Sbjct: 27  DITDKSERSYRKPRDVDDDLDADDRKSKRSRGDDENG 63



 Score = 42.4 bits (98), Expect(2) = 1e-09
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = +3

Query: 126 MEFDEYDYLEKAVEEHEDRDSTKKK 200
           M+FDEY+YLEK VEE  D+DS+KKK
Sbjct: 1   MDFDEYEYLEKTVEEDIDKDSSKKK 25


>ref|XP_003602518.1| Splicing factor-like protein [Medicago truncatula]
           gi|355491566|gb|AES72769.1| Splicing factor-like protein
           [Medicago truncatula]
          Length = 766

 Score = 45.1 bits (105), Expect(2) = 4e-09
 Identities = 23/39 (58%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
 Frame = +1

Query: 292 DSGDRSERSYRKREEIDEVAEEKRSKR---SRGDDEHGS 399
           +S D++ERSYRKR+EI++  EEKRSKR     GDDE  S
Sbjct: 25  ESSDKTERSYRKRDEIEDGTEEKRSKRRSSGDGDDERVS 63



 Score = 40.4 bits (93), Expect(2) = 4e-09
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +3

Query: 126 MEFDEYDYLEKAVEEHEDRDSTKKK 200
           M+FDEY+YLEK VEE ED+DS K +
Sbjct: 1   MDFDEYEYLEKTVEELEDKDSKKNE 25


>ref|XP_003602517.1| Splicing factor-like protein [Medicago truncatula]
           gi|355491565|gb|AES72768.1| Splicing factor-like protein
           [Medicago truncatula]
          Length = 731

 Score = 45.1 bits (105), Expect(2) = 4e-09
 Identities = 23/39 (58%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
 Frame = +1

Query: 292 DSGDRSERSYRKREEIDEVAEEKRSKR---SRGDDEHGS 399
           +S D++ERSYRKR+EI++  EEKRSKR     GDDE  S
Sbjct: 25  ESSDKTERSYRKRDEIEDGTEEKRSKRRSSGDGDDERVS 63



 Score = 40.4 bits (93), Expect(2) = 4e-09
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +3

Query: 126 MEFDEYDYLEKAVEEHEDRDSTKKK 200
           M+FDEY+YLEK VEE ED+DS K +
Sbjct: 1   MDFDEYEYLEKTVEELEDKDSKKNE 25


>ref|XP_002278030.1| PREDICTED: RNA-binding protein 39-like [Vitis vinifera]
          Length = 542

 Score = 43.1 bits (100), Expect(2) = 3e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 5/38 (13%)
 Frame = +1

Query: 292 DSGDRSERSYRKRE-----EIDEVAEEKRSKRSRGDDE 390
           D G++SERSYRKRE     + DE  E +RSKRSRG++E
Sbjct: 23  DGGEKSERSYRKREGGEEDDDDERGEGRRSKRSRGEEE 60



 Score = 36.2 bits (82), Expect(2) = 3e-07
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +3

Query: 126 MEFDEYDYLEKAVEEHEDRDSTKKK 200
           M+FDEY+YLEKAVEE E+R   KKK
Sbjct: 1   MDFDEYEYLEKAVEEPENR---KKK 22


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