BLASTX nr result

ID: Glycyrrhiza24_contig00018072 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00018072
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003550182.1| PREDICTED: uncharacterized protein LOC100820...   129   2e-28
gb|AFK48583.1| unknown [Lotus japonicus]                              127   9e-28
gb|AFK47791.1| unknown [Lotus japonicus]                              127   9e-28
gb|AFK38763.1| unknown [Medicago truncatula]                          120   9e-26
ref|XP_003588776.1| U11/U12 small nuclear ribonucleoprotein 25 k...   120   9e-26

>ref|XP_003550182.1| PREDICTED: uncharacterized protein LOC100820296 [Glycine max]
          Length = 275

 Score =  129 bits (324), Expect = 2e-28
 Identities = 70/102 (68%), Positives = 78/102 (76%), Gaps = 7/102 (6%)
 Frame = -3

Query: 285 STMAETRLIV----PSVKNTRRSQFPSSLGIFS---SNKSFFYDKLPSQPLRLSVLKLDA 127
           +T  E +LIV    P+ K+ RRS   SSL I     + KSFFYD+LPSQPLRL+VLKLD 
Sbjct: 2   ATEHEKQLIVAKPNPNTKSPRRSSTSSSLAIIDGIFARKSFFYDRLPSQPLRLTVLKLDG 61

Query: 126 SSFDIQVSKTATVAELKDAVEAVFSHMPQKGPAKISWPHVWG 1
           S F IQVSKTATVAELKDAVEAVFSH+P KGPAKISW HVWG
Sbjct: 62  SCFHIQVSKTATVAELKDAVEAVFSHVPHKGPAKISWAHVWG 103


>gb|AFK48583.1| unknown [Lotus japonicus]
          Length = 220

 Score =  127 bits (319), Expect = 9e-28
 Identities = 67/99 (67%), Positives = 77/99 (77%), Gaps = 6/99 (6%)
 Frame = -3

Query: 279 MAETRLIVPS----VKNTRRSQFP--SSLGIFSSNKSFFYDKLPSQPLRLSVLKLDASSF 118
           MAET LI+ +    +K+ +  QF   S +    + KSF Y KLPSQP RLSVLKLD SSF
Sbjct: 1   MAETSLILTTTTEKIKSRKLLQFSTISIIDTIFAKKSFLYGKLPSQPFRLSVLKLDGSSF 60

Query: 117 DIQVSKTATVAELKDAVEAVFSHMPQKGPAKISWPHVWG 1
           DIQVSKTA++AELKDAVEAVFSHMP+KGPAKISWPHVWG
Sbjct: 61  DIQVSKTASIAELKDAVEAVFSHMPEKGPAKISWPHVWG 99


>gb|AFK47791.1| unknown [Lotus japonicus]
          Length = 269

 Score =  127 bits (319), Expect = 9e-28
 Identities = 67/99 (67%), Positives = 77/99 (77%), Gaps = 6/99 (6%)
 Frame = -3

Query: 279 MAETRLIVPS----VKNTRRSQFP--SSLGIFSSNKSFFYDKLPSQPLRLSVLKLDASSF 118
           MAET LI+ +    +K+ +  QF   S +    + KSF Y KLPSQP RLSVLKLD SSF
Sbjct: 1   MAETSLILTTTTEKIKSRKLLQFSTISIIDTIFAKKSFLYGKLPSQPFRLSVLKLDGSSF 60

Query: 117 DIQVSKTATVAELKDAVEAVFSHMPQKGPAKISWPHVWG 1
           DIQVSKTA++AELKDAVEAVFSHMP+KGPAKISWPHVWG
Sbjct: 61  DIQVSKTASIAELKDAVEAVFSHMPEKGPAKISWPHVWG 99


>gb|AFK38763.1| unknown [Medicago truncatula]
          Length = 226

 Score =  120 bits (302), Expect = 9e-26
 Identities = 66/100 (66%), Positives = 76/100 (76%), Gaps = 7/100 (7%)
 Frame = -3

Query: 279 MAETRL--IVPSVKN-----TRRSQFPSSLGIFSSNKSFFYDKLPSQPLRLSVLKLDASS 121
           MAET L  I+P++K      +  S   S L IFS+ KS  YDKLPS+PLRLSVLKLD +S
Sbjct: 1   MAETSLSLILPNMKKKTTLFSSSSSSSSPLPIFST-KSLLYDKLPSEPLRLSVLKLDGTS 59

Query: 120 FDIQVSKTATVAELKDAVEAVFSHMPQKGPAKISWPHVWG 1
           FD+ VSK AT+AELKDAVE VFS+MPQ GPAKISWPHVWG
Sbjct: 60  FDVHVSKNATIAELKDAVEGVFSYMPQHGPAKISWPHVWG 99


>ref|XP_003588776.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
           truncatula] gi|355477824|gb|AES59027.1| U11/U12 small
           nuclear ribonucleoprotein 25 kDa protein [Medicago
           truncatula]
          Length = 266

 Score =  120 bits (302), Expect = 9e-26
 Identities = 66/100 (66%), Positives = 76/100 (76%), Gaps = 7/100 (7%)
 Frame = -3

Query: 279 MAETRL--IVPSVKN-----TRRSQFPSSLGIFSSNKSFFYDKLPSQPLRLSVLKLDASS 121
           MAET L  I+P++K      +  S   S L IFS+ KS  YDKLPS+PLRLSVLKLD +S
Sbjct: 1   MAETSLSLILPNMKKKTTLFSSSSSSSSPLPIFST-KSLLYDKLPSEPLRLSVLKLDGTS 59

Query: 120 FDIQVSKTATVAELKDAVEAVFSHMPQKGPAKISWPHVWG 1
           FD+ VSK AT+AELKDAVE VFS+MPQ GPAKISWPHVWG
Sbjct: 60  FDVHVSKNATIAELKDAVEGVFSYMPQHGPAKISWPHVWG 99


Top