BLASTX nr result

ID: Glycyrrhiza24_contig00018046 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00018046
         (519 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]              73   3e-11
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]              72   4e-11
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]              72   4e-11
gb|ABD32321.2| Ribonuclease H [Medicago truncatula]                    71   1e-10
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...    69   3e-10

>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 38/113 (33%), Positives = 61/113 (53%)
 Frame = -3

Query: 517  ISSCGGLVCNSYGSMIHGFYCKVGAGNALWAELWGLRMGIKLAQHLNLRNVVFEMNSKSI 338
            ++S GGL+ N  G  + G+ C +G  N+  AELWGLR G+ LA++     ++ E +S+++
Sbjct: 1222 LASAGGLLRNENGLWVAGYICNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAV 1281

Query: 337  LEMIASGGTNNGYL*PFLTEILDLLKQSD*QTSVVHAYREANRCADFLVRKGQ 179
            ++++   G         L +   LL     +  V H  RE N+CADFL   GQ
Sbjct: 1282 VQVLRKDGPVTPDA-SILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLGQ 1333


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 38/113 (33%), Positives = 61/113 (53%)
 Frame = -3

Query: 517  ISSCGGLVCNSYGSMIHGFYCKVGAGNALWAELWGLRMGIKLAQHLNLRNVVFEMNSKSI 338
            ++S GGL+ N  G  + G+ C +G  N+  AELWGLR G+ LA++     ++ E +S+++
Sbjct: 1754 LASAGGLLRNENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAV 1813

Query: 337  LEMIASGGTNNGYL*PFLTEILDLLKQSD*QTSVVHAYREANRCADFLVRKGQ 179
            ++++   G         L +   LL     +  V H  RE N+CADFL   GQ
Sbjct: 1814 VQVLRKDGPVTPDA-SILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLGQ 1865


>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 38/113 (33%), Positives = 61/113 (53%)
 Frame = -3

Query: 517  ISSCGGLVCNSYGSMIHGFYCKVGAGNALWAELWGLRMGIKLAQHLNLRNVVFEMNSKSI 338
            ++S GGL+ N  G  + G+ C +G  N+  AELWGLR G+ LA++     ++ E +S+++
Sbjct: 1222 LASAGGLLRNENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAV 1281

Query: 337  LEMIASGGTNNGYL*PFLTEILDLLKQSD*QTSVVHAYREANRCADFLVRKGQ 179
            ++++   G         L +   LL     +  V H  RE N+CADFL   GQ
Sbjct: 1282 VQVLRKDGPVTPDA-SILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLGQ 1333


>gb|ABD32321.2| Ribonuclease H [Medicago truncatula]
          Length = 220

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 42/125 (33%), Positives = 70/125 (56%)
 Frame = -3

Query: 517 ISSCGGLVCNSYGSMIHGFYCKVGAGNALWAELWGLRMGIKLAQHLNLRNVVFEMNSKSI 338
           I+ CGGL  +  G  I G+  K+GA +AL AE+WGL +G+ +A   +  +++ E +SK +
Sbjct: 74  IAGCGGLFRDLDGRWIKGYTKKIGACDALHAEMWGLYLGLDMAWREHYSHLIVESDSKIL 133

Query: 337 LEMIASGGTNNGYL*PFLTEILDLLKQSD*QTSVVHAYREANRCADFLVRKGQLEPSFDW 158
           ++MI+     NG +   +  I  LLK S     + H +RE NR AD+L         F++
Sbjct: 134 IDMISDNFKFNGNIPVLVYRIRKLLKTS-WNVQLNHTWREGNRSADWLANLSISTYHFNF 192

Query: 157 VLVAS 143
           +++ S
Sbjct: 193 IVLES 197


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 676

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 46/147 (31%), Positives = 74/147 (50%)
 Frame = -3

Query: 514 SSCGGLVCNSYGSMIHGFYCKVGAGNALWAELWGLRMGIKLAQHLNLRNVVFEMNSKSIL 335
           ++ GG++ + +GS + GF   +G  +A  AELWG+  G+ +A     R V  E++S  ++
Sbjct: 531 ATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVV 590

Query: 334 EMIASGGTNNGYL*PFLTEILDLLKQSD*QTSVVHAYREANRCADFLVRKGQLEPSFDWV 155
             + S G  + +   FL  +       D    + H YREANR AD L       P F ++
Sbjct: 591 GFLQS-GIGDSHPLAFLVRLCHGFISKDWIVRITHVYREANRLADGLANYAFTLP-FGFL 648

Query: 154 LVASACPLLGILLADDVRGSLLPRLVR 74
           L+ S    +  +L +DV G+  PR VR
Sbjct: 649 LLDSCPEHVSSILLEDVMGTSFPRHVR 675


Top