BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00016935
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA74890.1| topoisomerase I [Pisum sativum]                        92   3e-17
ref|XP_003603800.1| DNA topoisomerase I [Medicago truncatula] gi...    77   1e-12
ref|XP_003603793.1| DNA topoisomerase I [Medicago truncatula] gi...    73   2e-11
ref|XP_003603785.1| DNA topoisomerase I [Medicago truncatula] gi...    55   5e-06

>emb|CAA74890.1| topoisomerase I [Pisum sativum]
          Length = 892

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 10/126 (7%)
 Frame = +3

Query: 6   SHLKTYSARSPIVGSKLPSLGDKKERLSGQKISVDVKEEKSSVKEDN---CGDSEDEEDD 176
           S + T S +SP+  S  PSLGDK + L GQ ++VDVK++ + +K      C   ED++DD
Sbjct: 72  SAVNTSSNKSPVANSNSPSLGDKPKPLLGQNVTVDVKKQTTPIKHPTKGYCEGLEDDDDD 131

Query: 177 KPLGARFKM-NNDNSKKVTPIVPKK--XXXXXXXXXIP----LSARLLRNTNLGRSSSNY 335
           KPL +R+K+ +N  SK V P+V  K           +P    LSA+L+RN+N G SS NY
Sbjct: 132 KPLSSRWKIKSNHGSKVVAPVVNNKSSQDSDSDDDVVPLSANLSAKLIRNSNSGTSSMNY 191

Query: 336 DDSDQK 353
           DD+D+K
Sbjct: 192 DDTDKK 197


>ref|XP_003603800.1| DNA topoisomerase I [Medicago truncatula]
           gi|355492848|gb|AES74051.1| DNA topoisomerase I
           [Medicago truncatula]
          Length = 921

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 54/119 (45%), Positives = 69/119 (57%), Gaps = 9/119 (7%)
 Frame = +3

Query: 24  SARSPIVGSKLPSLGDKKERLSGQKIS-----VDVKEEKSS---VKEDNCGDSEDEEDDK 179
           SA++  V S   S+G+ K   S  K       ++V EE +S   +KED C DSE EED  
Sbjct: 64  SAKASAVES---SVGNTKASTSNLKTQRNKDLINVNEENNSTKHLKEDRCEDSE-EEDSI 119

Query: 180 PLGA-RFKMNNDNSKKVTPIVPKKXXXXXXXXXIPLSARLLRNTNLGRSSSNYDDSDQK 353
           PL A + KMNN N KK TP V KK         IPLSAR  +NTNLG+ S N+DDS+++
Sbjct: 120 PLSAIKMKMNNGNVKKATPDVLKKSYEDSDDDDIPLSARFPKNTNLGKYSCNFDDSNKQ 178


>ref|XP_003603793.1| DNA topoisomerase I [Medicago truncatula]
           gi|355492841|gb|AES74044.1| DNA topoisomerase I
           [Medicago truncatula]
          Length = 1009

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 11/121 (9%)
 Frame = +3

Query: 24  SARSPIVGSKLPSLGDKKERLSGQKIS-----VDVKEEKSS---VKEDNCGDSEDEEDDK 179
           SA++  V S   S+G+ K   S  K       ++V EE +S   +KED C DSE EED  
Sbjct: 64  SAKASAVES---SVGNTKASTSNLKTQRNKDLINVNEENNSTKHLKEDRCEDSE-EEDSI 119

Query: 180 PLGA-RFKMNNDNSKKVTPIVPKK--XXXXXXXXXIPLSARLLRNTNLGRSSSNYDDSDQ 350
           PL + + KMNN N KK TP V KK           IPLSARL +NTNLG+S  N+DDS++
Sbjct: 120 PLSSIKMKMNNGNVKKATPDVLKKSYEDSDDDDDDIPLSARLPKNTNLGKSRCNFDDSNK 179

Query: 351 K 353
           +
Sbjct: 180 Q 180


>ref|XP_003603785.1| DNA topoisomerase I [Medicago truncatula]
           gi|355492833|gb|AES74036.1| DNA topoisomerase I
           [Medicago truncatula]
          Length = 789

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 38/75 (50%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +3

Query: 132 VKEDNCGDSEDEEDDKPLGA-RFKMNNDNSKKVTPIVPKKXXXXXXXXXIPLSARLLRNT 308
           +KED   DS DEED  PL   R KMNN N KK TP V KK         IPLSARL + T
Sbjct: 97  LKEDRREDSADEEDSMPLSVIRMKMNNANVKKATPNVLKK-SYEDFDDDIPLSARLSQIT 155

Query: 309 NLGRSSSNYDDSDQK 353
                  NYDDSD++
Sbjct: 156 -------NYDDSDKQ 163