BLASTX nr result

ID: Glycyrrhiza24_contig00016907 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00016907
         (231 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
ref|XP_003589699.1| Pentatricopeptide repeat-containing protein ...   113   1e-23
emb|CBI22850.3| unnamed protein product [Vitis vinifera]               93   3e-17
ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containi...    93   3e-17
ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15

>ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score =  114 bits (286), Expect = 6e-24
 Identities = 55/75 (73%), Positives = 63/75 (84%)
 Frame = -2

Query: 230 LNSVTYNTIMYGFSCHEMHQQVLQLLGKMLVNGVKPDEITVNIIMNAYCKLGKVRTAIQL 51
           LN VTYNT+MYGFS H   + VLQ+LG+MLVNGVKPD ITVN+++ AY KLGKVRTAIQ 
Sbjct: 526 LNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQF 585

Query: 50  LDKITAQKEFCPDII 6
           LD+ITA KE CPDII
Sbjct: 586 LDRITAGKELCPDII 600


>ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355478747|gb|AES59950.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  113 bits (283), Expect = 1e-23
 Identities = 56/73 (76%), Positives = 64/73 (87%)
 Frame = -2

Query: 221 VTYNTIMYGFSCHEMHQQVLQLLGKMLVNGVKPDEITVNIIMNAYCKLGKVRTAIQLLDK 42
           VTYNTIMYGFS + MHQQVLQLLGKMLVNG+K D ITVN  +NAYCKLGKV+TAI++LD 
Sbjct: 525 VTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDN 584

Query: 41  ITAQKEFCPDIIT 3
           I+A+KEF  DIIT
Sbjct: 585 ISAEKEFRADIIT 597


>emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 46/75 (61%), Positives = 59/75 (78%)
 Frame = -2

Query: 230 LNSVTYNTIMYGFSCHEMHQQVLQLLGKMLVNGVKPDEITVNIIMNAYCKLGKVRTAIQL 51
           LN VTYNTI+YG+ C  M  + L+LLGKM+V G KPD ITVNI+++AYCK GKV  AIQL
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQL 583

Query: 50  LDKITAQKEFCPDII 6
           +D+++A K + PDII
Sbjct: 584 MDRLSAGK-WHPDII 597


>ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 46/75 (61%), Positives = 59/75 (78%)
 Frame = -2

Query: 230 LNSVTYNTIMYGFSCHEMHQQVLQLLGKMLVNGVKPDEITVNIIMNAYCKLGKVRTAIQL 51
           LN VTYNTI+YG+ C  M  + L+LLGKM+V G KPD ITVNI+++AYCK GKV  AIQL
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQL 583

Query: 50  LDKITAQKEFCPDII 6
           +D+++A K + PDII
Sbjct: 584 MDRLSAGK-WHPDII 597


>ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 41/75 (54%), Positives = 55/75 (73%)
 Frame = -2

Query: 227 NSVTYNTIMYGFSCHEMHQQVLQLLGKMLVNGVKPDEITVNIIMNAYCKLGKVRTAIQLL 48
           N VTYNT++YGFS   M  + LQL GK LV G  PD IT N +++AYCK GKV+ A QL+
Sbjct: 523 NLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLV 582

Query: 47  DKITAQKEFCPDIIT 3
           +++++ KE+ PDIIT
Sbjct: 583 ERVSSMKEWHPDIIT 597


Top