BLASTX nr result

ID: Glycyrrhiza24_contig00016297 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00016297
         (646 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003597250.1| Ribonuclease [Medicago truncatula] gi|355486...   127   2e-27
ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding prote...   119   6e-25
ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycin...   101   1e-19
ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding prote...    99   7e-19
gb|AFK41322.1| unknown [Lotus japonicus]                               91   1e-16

>ref|XP_003597250.1| Ribonuclease [Medicago truncatula] gi|355486298|gb|AES67501.1|
           Ribonuclease [Medicago truncatula]
          Length = 408

 Score =  127 bits (319), Expect = 2e-27
 Identities = 74/121 (61%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 1   YVPIRQMRSPCQGIAPPVTVRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVNIRQAVP 180
           YVPIRQMR PC GIAP V+VRT                              V+IRQAVP
Sbjct: 290 YVPIRQMR-PCHGIAPAVSVRTVIPVFSAPPLPPPTSVHQIIRAPPVRIAPPVSIRQAVP 348

Query: 181 VFAAPPLRKDEPAPIRKEDLPTSSTPVQQEKLPAKIQEMDKNE-NSPPESETARSLEQLK 357
           VFAAPPLRKDEPAPI+K DLP SSTPV+Q+KLPAKI EMDK E NSPP+ ET +SLEQLK
Sbjct: 349 VFAAPPLRKDEPAPIQK-DLPASSTPVEQDKLPAKILEMDKTENNSPPQPETLQSLEQLK 407

Query: 358 I 360
           I
Sbjct: 408 I 408


>ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
          Length = 411

 Score =  119 bits (297), Expect = 6e-25
 Identities = 65/121 (53%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
 Frame = +1

Query: 1   YVPIRQMRSPCQGIAPPVTVRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-VNIRQAV 177
           YVPIRQMR  CQ IAPPVT+RT                               V IRQAV
Sbjct: 291 YVPIRQMRPSCQRIAPPVTIRTVVPAFATPPCPPPASVPHPAIRAPPVRVAPPVTIRQAV 350

Query: 178 PVFAAPPLRKDEPAPIRKEDLPTSSTPVQQEKLPAKIQEMDKNENSPPESETARSLEQLK 357
           PV+AAPP +K+EPA ++++DLPT+    QQ+KLP KIQEMDK EN PPESET RSLEQL+
Sbjct: 351 PVYAAPPSKKNEPAAVQQKDLPTAGASGQQDKLPVKIQEMDKAENIPPESETMRSLEQLR 410

Query: 358 I 360
           I
Sbjct: 411 I 411


>ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
           gi|255644888|gb|ACU22944.1| unknown [Glycine max]
          Length = 401

 Score =  101 bits (251), Expect = 1e-19
 Identities = 61/123 (49%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
 Frame = +1

Query: 1   YVPIRQMRSPCQGIAPPVTVRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVNIRQAVP 180
           YVPIRQMR PCQG+APPVT+RT                              V IRQAVP
Sbjct: 281 YVPIRQMR-PCQGMAPPVTIRTAIPVFSPPPAAAAVSHQVLRAPHVRVAPP-VTIRQAVP 338

Query: 181 VFAAPP--LRKDEPAPIRKEDLPTSSTPVQQEKLPAKIQEMD-KNENSPPESETARSLEQ 351
           VFA PP  +RKDEP PI K++ PT S P  ++KLPAK  E + K EN PP+ +  +SLEQ
Sbjct: 339 VFATPPPPIRKDEPVPIPKDEPPTISAPSPEDKLPAKTPEAETKTENIPPKPDMVKSLEQ 398

Query: 352 LKI 360
           LKI
Sbjct: 399 LKI 401


>ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
          Length = 411

 Score = 99.0 bits (245), Expect = 7e-19
 Identities = 64/132 (48%), Positives = 73/132 (55%), Gaps = 12/132 (9%)
 Frame = +1

Query: 1   YVPIRQMRSPCQGIAPPVTVRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-VNIRQAV 177
           YVPIRQMR PCQG+APPVT+RT                               V IRQAV
Sbjct: 281 YVPIRQMR-PCQGMAPPVTIRTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAV 339

Query: 178 PVFAAPP--LRKDEPAP--------IRKEDLPTSSTPVQQEKLPAKIQEMD-KNENSPPE 324
           PVFAAPP  +RKDEP P        + K+D PT S P  ++KLP K  E + K EN PPE
Sbjct: 340 PVFAAPPPPVRKDEPVPIPKDEPVAVPKDDSPTISAPSLEDKLPTKTPETETKTENIPPE 399

Query: 325 SETARSLEQLKI 360
            ET +SLEQLKI
Sbjct: 400 PETVQSLEQLKI 411


>gb|AFK41322.1| unknown [Lotus japonicus]
          Length = 285

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 54/109 (49%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
 Frame = +1

Query: 1   YVPIRQMRSPCQGIAPPVTVRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVNIRQAVP 180
           YVP+RQMRSPC G+APPVTVR                               VNIRQA+P
Sbjct: 113 YVPLRQMRSPCHGVAPPVTVRNMVPVFSAPPLPPPPTVHQVIRAPPVRVAPPVNIRQAIP 172

Query: 181 VFAAPPL--RKDEPAPIRKEDLPTSSTPVQQEKLPAKIQEMDKNENSPP 321
           V+AAPP+  RK EP+ I+K DL T S P QQ+ LP KIQE  K ENS P
Sbjct: 173 VYAAPPVPARKGEPSLIQK-DLSTISIPCQQDILPHKIQETGKAENSLP 220



 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 44/68 (64%), Positives = 55/68 (80%)
 Frame = +1

Query: 157 VNIRQAVPVFAAPPLRKDEPAPIRKEDLPTSSTPVQQEKLPAKIQEMDKNENSPPESETA 336
           VN +QA+PV+AAPP R DEP+ I+KE+LPT STP QQ+KLP ++QE    ENSP ESET 
Sbjct: 221 VNFQQAIPVYAAPPTRIDEPSLIQKEELPTISTPGQQDKLPPRVQE---TENSPSESETV 277

Query: 337 RSLEQLKI 360
           R+LE+LKI
Sbjct: 278 RNLEKLKI 285


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