BLASTX nr result
ID: Glycyrrhiza24_contig00016151
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00016151
(1360 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003555800.1| PREDICTED: RNA polymerase II-associated prot... 437 e-178
ref|XP_003527230.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera... 401 e-167
emb|CBI39598.3| unnamed protein product [Vitis vinifera] 337 e-133
ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot... 337 e-133
ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|2... 303 e-130
>ref|XP_003555800.1| PREDICTED: RNA polymerase II-associated protein 3-like [Glycine max]
Length = 455
Score = 437 bits (1124), Expect(2) = e-178
Identities = 237/323 (73%), Positives = 256/323 (79%), Gaps = 15/323 (4%)
Frame = -1
Query: 1336 MDFQGFLNDLQDWELSRKDDKARKTKSQKENV--------VGVEKTSRGDAISFDHARNS 1181
MDF GFLNDLQDWE SRKD K + QKEN VGVEK S+GD ISFD+ARNS
Sbjct: 1 MDFHGFLNDLQDWEFSRKD----KARPQKENASSSRITGSVGVEKASKGDTISFDNARNS 56
Query: 1180 SAQYDFSRDNDPFSRVHSSFVSEDVPDATSEKDLGNEFFKQKKFKEAIDCYSRSIALSPT 1001
QYD SR N +HSSFV EDVPDA SEKDLGNEFFKQKKFKEA DCYSRSIALSPT
Sbjct: 57 PGQYDLSRIN----HLHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPT 112
Query: 1000 AVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKVKESMEDAEF 821
AVAYANRAMA IKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK+KESM+DAEF
Sbjct: 113 AVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEF 172
Query: 820 AMRLEPNNQEVKKQYADAKSLCEKEILQKAAGALRSTVQGTQQVGKSETKVNGGSVHSVS 641
A+RLEPNNQE+KKQYADAKS EK+ILQKA+G LRSTVQGTQ+VGKSE KVNG S+H +S
Sbjct: 173 ALRLEPNNQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPIS 232
Query: 640 HGTQKSGPAEAYHHTKGNEWQIPAKESLAVEEIDNRDTEARSRTQGQ-------GYSASN 482
TQKSG AE +HH K N+ QI KESL E++D R+ +ARS Q Q G SASN
Sbjct: 233 RSTQKSGLAEVHHHKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASN 292
Query: 481 SLEQVKRNHRPRKQEMKASVQQL 413
SLEQ RNHR K EMKASVQQL
Sbjct: 293 SLEQ--RNHRITKPEMKASVQQL 313
Score = 216 bits (551), Expect(2) = e-178
Identities = 104/124 (83%), Positives = 114/124 (91%)
Frame = -2
Query: 372 KNLTPPTTAYQFEASWKGFSGDLTLQARLLKAISPHELPKIFKNALSSTLLVEIIKCAAS 193
KN+TPPTTAYQFE SW+ FSGDL LQARLLKAISPHELPKIFKNALSST+L+EIIKC AS
Sbjct: 327 KNVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPHELPKIFKNALSSTILIEIIKCLAS 386
Query: 192 FFVEDMDLVVSYMENLTKVPRFDMIVMCLPSAAKDDLRKIWDEVFCGEATPMEYAEILDN 13
F EDMDLVVSY+E+LTKVPRFD+IVMCL S KDD+RKIWDEVF GEATP+EYAEILDN
Sbjct: 387 LFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNKDDIRKIWDEVFSGEATPIEYAEILDN 446
Query: 12 LRSK 1
L+SK
Sbjct: 447 LQSK 450
>ref|XP_003527230.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein
3-like [Glycine max]
Length = 474
Score = 401 bits (1031), Expect(2) = e-167
Identities = 214/295 (72%), Positives = 239/295 (81%), Gaps = 7/295 (2%)
Frame = -1
Query: 1276 KARKTKSQKENVVGVEKTSRGDAISFDHARNSSAQYDFSRDNDPFSRVHSSFVSEDVPDA 1097
+ + + S+ VGV+K S+GD I F +ARNS QYD SR N +HSSFV EDVPDA
Sbjct: 44 RIKVSSSRITGSVGVKKASKGDTIFFYNARNSPGQYDLSRIN----HLHSSFVPEDVPDA 99
Query: 1096 TSEKDLGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYIKLRRFQEAEDDCTEAL 917
SEKDLGNEFFKQKKFKEA DCYSRSIALSPTAVAYANRAMA IKLRRFQEAEDDCTEAL
Sbjct: 100 ASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEAL 159
Query: 916 NLDDRYIKAYSRRATARKELGKVKESMEDAEFAMRLEPNNQEVKKQYADAKSLCEKEILQ 737
NLDDRYIKAYSRRATARKELGK+KESM+DAEFA+RLEPNNQE+KKQYADAKS EK+ILQ
Sbjct: 160 NLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKKQYADAKSFYEKDILQ 219
Query: 736 KAAGALRSTVQGTQQVGKSETKVNGGSVHSVSHGTQKSGPAEAYHHTKGNEWQIPAKESL 557
KA+G LRSTVQGTQ+VGKSE KVNG S+H +SH TQKSG AE +HH K NE +I KESL
Sbjct: 220 KASGVLRSTVQGTQKVGKSEEKVNGDSIHPISHSTQKSGLAEVHHHKKDNERKILVKESL 279
Query: 556 AVEEIDNRDTEARSRTQGQ-------GYSASNSLEQVKRNHRPRKQEMKASVQQL 413
E++D+R+ +ARSR Q Q G SASNSLEQ RNHR K EMKASV+QL
Sbjct: 280 LTEDVDSREIKARSRPQSQGDDGSKGGLSASNSLEQ--RNHRITKPEMKASVEQL 332
Score = 214 bits (545), Expect(2) = e-167
Identities = 103/124 (83%), Positives = 113/124 (91%)
Frame = -2
Query: 372 KNLTPPTTAYQFEASWKGFSGDLTLQARLLKAISPHELPKIFKNALSSTLLVEIIKCAAS 193
KN+TPPTTAYQFE SW+ FSGDL LQARLLKAISPH LPKIFKNALSST+L+EIIKC AS
Sbjct: 346 KNVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPHXLPKIFKNALSSTILIEIIKCLAS 405
Query: 192 FFVEDMDLVVSYMENLTKVPRFDMIVMCLPSAAKDDLRKIWDEVFCGEATPMEYAEILDN 13
F EDMDLVVSY+E+LTKVPRFD+IVMCL S KDD+RKIWDEVF GEATP+EYAEILDN
Sbjct: 406 LFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNKDDIRKIWDEVFSGEATPIEYAEILDN 465
Query: 12 LRSK 1
L+SK
Sbjct: 466 LQSK 469
>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
Length = 1097
Score = 337 bits (865), Expect(2) = e-133
Identities = 182/324 (56%), Positives = 243/324 (75%), Gaps = 15/324 (4%)
Frame = -1
Query: 1339 SMDFQGFLNDLQDWELSRKD-DKARKTKSQKENVVGVE---------KTSRGDAISFDHA 1190
++DFQGFL DLQDWELS K+ DK K ++++++V +S G ++ +
Sbjct: 637 ALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGVSLRLGQS 696
Query: 1189 RNSSAQYDFSRDNDPFSRVHSSFVSED-VPDATSEKDLGNEFFKQKKFKEAIDCYSRSIA 1013
R+ + Q+++SR++D SR+ SSF++E+ +PDA SEK+LGNE+FKQ+KFKEAIDCYSRSIA
Sbjct: 697 RSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIA 756
Query: 1012 LSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKVKESME 833
L PTAVAYANRAMAYIK++RF+EAEDDC EALNLDDRYIKAYSRRATARKELGK KE+ E
Sbjct: 757 LLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATE 816
Query: 832 DAEFAMRLEPNNQEVKKQYADAKSLCEKEILQKAAGALRSTVQGTQQVGKSETKVNGGS- 656
DAEFA+RLEP NQE+KKQYA+AKSL EKEILQKA+GAL+S+VQG Q+VGKS +VN +
Sbjct: 817 DAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVVEVNADTQ 876
Query: 655 -VHSVSHGTQKSGPAEAYHHTKGNEWQIPAKESLAVEEIDNRDTEARSRTQGQGYSA--S 485
V S+S +Q +G A + + +PA S ++EE +N+ T RS+ G +A +
Sbjct: 877 GVRSISSSSQGAGEAAIQ-----DRFMVPANTSTSMEETENKGTGNRSKENGYLENAVQN 931
Query: 484 NSLEQVKRNHRPRKQEMKASVQQL 413
+ LE V NH+ ++EMK+S+Q+L
Sbjct: 932 SGLEDVMSNHKTGQREMKSSLQEL 955
Score = 165 bits (417), Expect(2) = e-133
Identities = 77/124 (62%), Positives = 96/124 (77%)
Frame = -2
Query: 372 KNLTPPTTAYQFEASWKGFSGDLTLQARLLKAISPHELPKIFKNALSSTLLVEIIKCAAS 193
KN+T P +AYQFE SW+G GD LQA LKAISP+ LP+IFKNALS+ +L++IIKC A+
Sbjct: 969 KNITAPNSAYQFEVSWRGLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIAT 1028
Query: 192 FFVEDMDLVVSYMENLTKVPRFDMIVMCLPSAAKDDLRKIWDEVFCGEATPMEYAEILDN 13
FFV +MDL V +++NLTK+ RFDMI+MCL S K DL KIWDEVFC +ATP YA+ L
Sbjct: 1029 FFVTEMDLAVKFLDNLTKISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGK 1088
Query: 12 LRSK 1
LR +
Sbjct: 1089 LRPR 1092
>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis
vinifera]
Length = 474
Score = 337 bits (865), Expect(2) = e-133
Identities = 182/324 (56%), Positives = 243/324 (75%), Gaps = 15/324 (4%)
Frame = -1
Query: 1339 SMDFQGFLNDLQDWELSRKD-DKARKTKSQKENVVGVE---------KTSRGDAISFDHA 1190
++DFQGFL DLQDWELS K+ DK K ++++++V +S G ++ +
Sbjct: 14 ALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGVSLRLGQS 73
Query: 1189 RNSSAQYDFSRDNDPFSRVHSSFVSED-VPDATSEKDLGNEFFKQKKFKEAIDCYSRSIA 1013
R+ + Q+++SR++D SR+ SSF++E+ +PDA SEK+LGNE+FKQ+KFKEAIDCYSRSIA
Sbjct: 74 RSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIA 133
Query: 1012 LSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKVKESME 833
L PTAVAYANRAMAYIK++RF+EAEDDC EALNLDDRYIKAYSRRATARKELGK KE+ E
Sbjct: 134 LLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATE 193
Query: 832 DAEFAMRLEPNNQEVKKQYADAKSLCEKEILQKAAGALRSTVQGTQQVGKSETKVNGGS- 656
DAEFA+RLEP NQE+KKQYA+AKSL EKEILQKA+GAL+S+VQG Q+VGKS +VN +
Sbjct: 194 DAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVVEVNADTQ 253
Query: 655 -VHSVSHGTQKSGPAEAYHHTKGNEWQIPAKESLAVEEIDNRDTEARSRTQGQGYSA--S 485
V S+S +Q +G A + + +PA S ++EE +N+ T RS+ G +A +
Sbjct: 254 GVRSISSSSQGAGEAAIQ-----DRFMVPANTSTSMEETENKGTGNRSKENGYLENAVQN 308
Query: 484 NSLEQVKRNHRPRKQEMKASVQQL 413
+ LE V NH+ ++EMK+S+Q+L
Sbjct: 309 SGLEDVMSNHKTGQREMKSSLQEL 332
Score = 165 bits (417), Expect(2) = e-133
Identities = 77/124 (62%), Positives = 96/124 (77%)
Frame = -2
Query: 372 KNLTPPTTAYQFEASWKGFSGDLTLQARLLKAISPHELPKIFKNALSSTLLVEIIKCAAS 193
KN+T P +AYQFE SW+G GD LQA LKAISP+ LP+IFKNALS+ +L++IIKC A+
Sbjct: 346 KNITAPNSAYQFEVSWRGLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIAT 405
Query: 192 FFVEDMDLVVSYMENLTKVPRFDMIVMCLPSAAKDDLRKIWDEVFCGEATPMEYAEILDN 13
FFV +MDL V +++NLTK+ RFDMI+MCL S K DL KIWDEVFC +ATP YA+ L
Sbjct: 406 FFVTEMDLAVKFLDNLTKISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGK 465
Query: 12 LRSK 1
LR +
Sbjct: 466 LRPR 469
>ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|222857325|gb|EEE94872.1|
predicted protein [Populus trichocarpa]
Length = 471
Score = 303 bits (775), Expect(2) = e-130
Identities = 177/333 (53%), Positives = 229/333 (68%), Gaps = 24/333 (7%)
Frame = -1
Query: 1339 SMDFQGFLNDLQDWELSRKDDKARKTKSQKENVVGVEKTSRGDAISFDHARNSSAQYDFS 1160
++DFQGFLNDLQDWEL + DK K KS T + A+ F +SS YD +
Sbjct: 13 ALDFQGFLNDLQDWELLKDTDKKMKKKS----------TGKTSAVDFS---SSSGMYDHA 59
Query: 1159 RDNDPFSRVHSSF-VSEDVPDATSEKDLGNEFFKQKKFKEAIDCYSRSIALSPTAVAYAN 983
R+ D +R+ +SF + E DAT+EK+LGNE+FKQKK+KEAI+CYSRSIALSPTAVAYAN
Sbjct: 60 RNFDAINRLSNSFAIDESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAYAN 119
Query: 982 RAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKVKESMEDAEFAMRLEP 803
RAMAY+K++R +AEDDCTEALNLDDRYIKAYSRRAT RKELGK+KES+ED+EFA++LEP
Sbjct: 120 RAMAYLKIKR--QAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKLEP 177
Query: 802 NNQEVKKQYADAKSLCEK--------------EILQ----KAAGALRSTVQGTQQVGKSE 677
NNQE+KKQYA+ KSL EK +LQ KA+ +LRS++QG Q+ G+SE
Sbjct: 178 NNQEIKKQYAEVKSLYEKASDSTICCYSGCYISLLQFFVTKASESLRSSLQGAQKGGRSE 237
Query: 676 TKVNGGSVHSVSHGTQKSG-PAEAYHHTKGNEWQIPAKESLAVEEIDNRDTEARSRTQGQ 500
VNG +VH VS+ TQ++G A K N+ K+S+ VEEI N+ T A SR+ GQ
Sbjct: 238 ASVNGHAVHPVSNVTQRTGASASQKDKAKENDGDGVVKKSVYVEEIKNKSTGAGSRSDGQ 297
Query: 499 --GYSASNSL--EQVKRNHRPRKQEMKASVQQL 413
S +N++ + +QE+KASV++L
Sbjct: 298 LGNDSRANAIPSSNAESIQVTGRQELKASVKEL 330
Score = 189 bits (481), Expect(2) = e-130
Identities = 84/124 (67%), Positives = 106/124 (85%)
Frame = -2
Query: 372 KNLTPPTTAYQFEASWKGFSGDLTLQARLLKAISPHELPKIFKNALSSTLLVEIIKCAAS 193
KN+TPP +AYQFE SW+GFSGD LQA LLK ++P LP+IFKNALS T+L++IIKC +S
Sbjct: 344 KNITPPNSAYQFEVSWRGFSGDRALQAHLLKVVTPSALPQIFKNALSVTILIDIIKCVSS 403
Query: 192 FFVEDMDLVVSYMENLTKVPRFDMIVMCLPSAAKDDLRKIWDEVFCGEATPMEYAEILDN 13
FF++DMDL V Y+ENLT+VPRFD+++MCLPS K DL K+WDEVFC EATP++YAEILD
Sbjct: 404 FFIDDMDLAVKYLENLTEVPRFDILIMCLPSTDKADLLKMWDEVFCSEATPIKYAEILDK 463
Query: 12 LRSK 1
+RS+
Sbjct: 464 MRSR 467