BLASTX nr result

ID: Glycyrrhiza24_contig00015698 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00015698
         (269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003610262.1| Nucleoporin Nup43 [Medicago truncatula] gi|3...   177   8e-43
ref|XP_003549530.1| PREDICTED: nucleoporin Nup43-like [Glycine max]   175   4e-42
ref|XP_003518229.1| PREDICTED: uncharacterized protein LOC100795...   171   7e-41
ref|NP_567858.1| transducin/WD40 domain-containing protein [Arab...   136   2e-30
gb|AAM63718.1| unknown [Arabidopsis thaliana]                         136   2e-30

>ref|XP_003610262.1| Nucleoporin Nup43 [Medicago truncatula] gi|355511317|gb|AES92459.1|
           Nucleoporin Nup43 [Medicago truncatula]
          Length = 351

 Score =  177 bits (449), Expect = 8e-43
 Identities = 85/89 (95%), Positives = 86/89 (96%)
 Frame = -1

Query: 269 GAGDGAGNTAVQSISESEVWEVQYDRCIKPNTSSTRILPAMICSEDGILGVIEQGEEPIE 90
           GAGDGAGNTAVQSISESEVWEVQYDRCIK NTSSTRILPAMICSEDGILGVIEQGEEPIE
Sbjct: 256 GAGDGAGNTAVQSISESEVWEVQYDRCIKSNTSSTRILPAMICSEDGILGVIEQGEEPIE 315

Query: 89  LLAEPCAINSFDIDRHNPSDVICSFEWEA 3
           LLAEPCAINSFDIDRHNP DVICS EWE+
Sbjct: 316 LLAEPCAINSFDIDRHNPLDVICSLEWES 344


>ref|XP_003549530.1| PREDICTED: nucleoporin Nup43-like [Glycine max]
          Length = 347

 Score =  175 bits (443), Expect = 4e-42
 Identities = 86/90 (95%), Positives = 87/90 (96%), Gaps = 1/90 (1%)
 Frame = -1

Query: 269 GAGDGAG-NTAVQSISESEVWEVQYDRCIKPNTSSTRILPAMICSEDGILGVIEQGEEPI 93
           GAG GAG NTAVQSISESEVWEVQYDRCIKPNTSSTRILP+MICSEDGILGVIEQGEEPI
Sbjct: 251 GAGAGAGGNTAVQSISESEVWEVQYDRCIKPNTSSTRILPSMICSEDGILGVIEQGEEPI 310

Query: 92  ELLAEPCAINSFDIDRHNPSDVICSFEWEA 3
           ELLAEPCAINSFDIDRHNPSDVICS EWEA
Sbjct: 311 ELLAEPCAINSFDIDRHNPSDVICSLEWEA 340


>ref|XP_003518229.1| PREDICTED: uncharacterized protein LOC100795073 [Glycine max]
          Length = 346

 Score =  171 bits (432), Expect = 7e-41
 Identities = 82/88 (93%), Positives = 84/88 (95%)
 Frame = -1

Query: 266 AGDGAGNTAVQSISESEVWEVQYDRCIKPNTSSTRILPAMICSEDGILGVIEQGEEPIEL 87
           +G GA NTAVQSISESEVWEVQYDRCIK NTSSTRILP+MICSEDGILGVIEQGEEPIEL
Sbjct: 252 SGAGAANTAVQSISESEVWEVQYDRCIKSNTSSTRILPSMICSEDGILGVIEQGEEPIEL 311

Query: 86  LAEPCAINSFDIDRHNPSDVICSFEWEA 3
           LAEPCAINSFDIDRHNPSDVICS EWEA
Sbjct: 312 LAEPCAINSFDIDRHNPSDVICSLEWEA 339


>ref|NP_567858.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]
           gi|90093296|gb|ABD85161.1| At4g30840 [Arabidopsis
           thaliana] gi|332660417|gb|AEE85817.1| transducin/WD40
           domain-containing protein [Arabidopsis thaliana]
          Length = 361

 Score =  136 bits (343), Expect = 2e-30
 Identities = 65/88 (73%), Positives = 70/88 (79%)
 Frame = -1

Query: 266 AGDGAGNTAVQSISESEVWEVQYDRCIKPNTSSTRILPAMICSEDGILGVIEQGEEPIEL 87
           +G GA       +SESEVWEVQYD   K N SS+RILP M CSEDGILG+IEQGEEPIEL
Sbjct: 267 SGVGASENINNPLSESEVWEVQYDSYTKSNVSSSRILPVMTCSEDGILGIIEQGEEPIEL 326

Query: 86  LAEPCAINSFDIDRHNPSDVICSFEWEA 3
           LAEPCAINSFDIDR NP DVICS EWE+
Sbjct: 327 LAEPCAINSFDIDRQNPQDVICSLEWES 354


>gb|AAM63718.1| unknown [Arabidopsis thaliana]
          Length = 358

 Score =  136 bits (343), Expect = 2e-30
 Identities = 65/88 (73%), Positives = 70/88 (79%)
 Frame = -1

Query: 266 AGDGAGNTAVQSISESEVWEVQYDRCIKPNTSSTRILPAMICSEDGILGVIEQGEEPIEL 87
           +G GA       +SESEVWEVQYD   K N SS+RILP M CSEDGILG+IEQGEEPIEL
Sbjct: 264 SGVGASENINNPLSESEVWEVQYDSYTKSNVSSSRILPVMTCSEDGILGIIEQGEEPIEL 323

Query: 86  LAEPCAINSFDIDRHNPSDVICSFEWEA 3
           LAEPCAINSFDIDR NP DVICS EWE+
Sbjct: 324 LAEPCAINSFDIDRQNPQDVICSLEWES 351


Top