BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00015674
         (1221 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat...   637   e-180
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...   614   e-173
ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...   487   e-135
ref|XP_002516017.1| pentatricopeptide repeat-containing protein,...   472   e-131
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   461   e-127

>ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 631

 Score =  637 bits (1642), Expect = e-180
 Identities = 323/395 (81%), Positives = 340/395 (86%), Gaps = 7/395 (1%)
 Frame = +1

Query: 58   MSFYSIKKTQEXXXXXXXXXXXXXXXXX------YHSFATQQIPQHNPFPSKDQVDPFPP 219
            MSF SI+KTQE                       + SFATQ IPQH       +VD FP 
Sbjct: 1    MSFSSIRKTQETSRILSILSFSLNLFPVSPYYFLHQSFATQLIPQH-------KVDSFPS 53

Query: 220  SPTS-YCYTSLLQSCIAAKALRPGKQLHAQLCQLGVAYNQDLATKLVHFYSVCNSLRNAH 396
            SP++ Y Y SLL+SCI+AKAL PGKQLHA+LCQLG+AYN DLATKLV+FYSVCNSLRNAH
Sbjct: 54   SPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAH 113

Query: 397  QLFDKIPKGNLFLWNVLIQGYAWNGPHEDSISLYHQMLEYGLKPDNFTLPFVLKACSALS 576
             LFDKIPKGNLFLWNVLI+ YAWNGPHE +ISLYHQMLEYGLKPDNFTLPFVLKACSALS
Sbjct: 114  HLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALS 173

Query: 577  AIGEGRSIHEYVIRSGWERDVFVGAALIDMYAKCGCVMDARHVFDKIVVRDAVLWNSMLA 756
             IGEGR IHE VIRSGWERDVFVGAAL+DMYAKCGCV+DARHVFDKIV RDAVLWNSMLA
Sbjct: 174  TIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLA 233

Query: 757  AYAQNGHPDESLSLCCEMAAMCVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQS 936
            AYAQNGHPDESLSLCCEMAA  VRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQ 
Sbjct: 234  AYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQY 293

Query: 937  NDKVKTALIDMYAKCGSVKVARALFERLREKRVVSWNAIITGYAMHGLAIEALDLFERMR 1116
            NDKVKTALIDMYAKCGSVKVA  LFERLREKRVVSWNAIITGYAMHGLA+EALDLFERM 
Sbjct: 294  NDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMM 353

Query: 1117 KEARPDLITFVGVLAACSRGRLLDEGRALYSLMVR 1221
            KEA+PD ITFVG LAACSRGRLLDEGRALY+LMVR
Sbjct: 354  KEAQPDHITFVGALAACSRGRLLDEGRALYNLMVR 388


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical
            [Medicago truncatula] gi|355486783|gb|AES67986.1|
            Pentatricopeptide repeat-containing protein [Medicago
            truncatula]
          Length = 620

 Score =  614 bits (1583), Expect = e-173
 Identities = 312/389 (80%), Positives = 332/389 (85%), Gaps = 1/389 (0%)
 Frame = +1

Query: 58   MSFYSIKKTQEXXXXXXXXXXXXXXXXXYHSFATQQIPQHNPFPSKDQVDPFPPSPTS-Y 234
            MSFYSIKKTQ                  YHS AT Q            VD FPP PT+ Y
Sbjct: 1    MSFYSIKKTQHTSFIFNLFPFSQSF---YHSLATHQTAS---------VDSFPPQPTTHY 48

Query: 235  CYTSLLQSCIAAKALRPGKQLHAQLCQLGVAYNQDLATKLVHFYSVCNSLRNAHQLFDKI 414
             YTSLLQSCI +KAL PGKQLHAQ   LG+AYNQDLATKLVH Y+V NSL NA  LFDKI
Sbjct: 49   GYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKI 108

Query: 415  PKGNLFLWNVLIQGYAWNGPHEDSISLYHQMLEYGLKPDNFTLPFVLKACSALSAIGEGR 594
            PK NLFLWNVLI+GYAWNGPH+++I LYH+ML+YGL+PDNFTLPFVLKACSALSAIGEGR
Sbjct: 109  PKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGR 168

Query: 595  SIHEYVIRSGWERDVFVGAALIDMYAKCGCVMDARHVFDKIVVRDAVLWNSMLAAYAQNG 774
            SIHEYVI+SGWERD+FVGAALIDMYAKCGCVMDA  VFDKIVVRDAVLWNSMLAAYAQNG
Sbjct: 169  SIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNG 228

Query: 775  HPDESLSLCCEMAAMCVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQSNDKVKT 954
            HPDES+SLC EMAA  VRPTEATLVTVISSSAD+ACLP+GREIHGFGWRHGFQSNDKVKT
Sbjct: 229  HPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKT 288

Query: 955  ALIDMYAKCGSVKVARALFERLREKRVVSWNAIITGYAMHGLAIEALDLFERMRKEARPD 1134
            ALIDMYAKCGSVKVA ALFERLREKRVVSWNAIITGYAMHGLA+ ALDLF++MRKE RPD
Sbjct: 289  ALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKEDRPD 348

Query: 1135 LITFVGVLAACSRGRLLDEGRALYSLMVR 1221
             ITFVGVLAACSRGRLLDEGRALY+LMVR
Sbjct: 349  HITFVGVLAACSRGRLLDEGRALYNLMVR 377


>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like
            [Vitis vinifera]
          Length = 648

 Score =  487 bits (1253), Expect = e-135
 Identities = 235/334 (70%), Positives = 275/334 (82%)
 Frame = +1

Query: 220  SPTSYCYTSLLQSCIAAKALRPGKQLHAQLCQLGVAYNQDLATKLVHFYSVCNSLRNAHQ 399
            +PT   Y SLLQSCIA KA++PGKQLHAQ+C  G  ++  +ATKLV+ Y VC+SL +A  
Sbjct: 72   TPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARL 131

Query: 400  LFDKIPKGNLFLWNVLIQGYAWNGPHEDSISLYHQMLEYGLKPDNFTLPFVLKACSALSA 579
            LFD+IPK N+FLWNVLI+GYAWNGP+E ++ LY+QM +YGL PDNFT PFVLKAC+ALSA
Sbjct: 132  LFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSA 191

Query: 580  IGEGRSIHEYVIRSGWERDVFVGAALIDMYAKCGCVMDARHVFDKIVVRDAVLWNSMLAA 759
            I  GR IHE+V+++GWE+DVFVGAALIDMYAKCGCV  AR VFDKI+VRDAVLWNSMLAA
Sbjct: 192  IEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAA 251

Query: 760  YAQNGHPDESLSLCCEMAAMCVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQSN 939
            Y+QNGHPD  LSLC EM    +RPTEATLVT IS+SAD A LP GRE+HG  WR  F+S+
Sbjct: 252  YSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESH 311

Query: 940  DKVKTALIDMYAKCGSVKVARALFERLREKRVVSWNAIITGYAMHGLAIEALDLFERMRK 1119
            DKVKTAL+DMYAKCGSV+VAR LFERL  KRVVSWNA+ITGYAMHG A EALDLFE M +
Sbjct: 312  DKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNR 371

Query: 1120 EARPDLITFVGVLAACSRGRLLDEGRALYSLMVR 1221
             A+PD ITFVGVL+ACS G LL+EG   +  M+R
Sbjct: 372  VAKPDHITFVGVLSACSHGGLLEEGWMFFETMIR 405



 Score =  125 bits (314), Expect = 2e-26
 Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 1/235 (0%)
 Frame = +1

Query: 520  LKPDNFTLPFVLKACSALSAIGEGRSIHEYVIRSGWERDVFVGAALIDMYAKCGCVMDAR 699
            L P       +L++C A  AI  G+ +H  V  +G+  D  +   L+++Y  C  +  AR
Sbjct: 71   LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 700  HVFDKIVVRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAMCVRPTEATLVTVISSSADIA 879
             +FD+I   +  LWN ++  YA NG  + ++ L  +M    + P   T   V+ + A ++
Sbjct: 131  LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 880  CLPHGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVARALFERLREKRVVSWNAIIT 1059
             + HGREIH    + G++ +  V  ALIDMYAKCG V  AR +F+++  +  V WN+++ 
Sbjct: 191  AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLA 250

Query: 1060 GYAMHGLAIEALDL-FERMRKEARPDLITFVGVLAACSRGRLLDEGRALYSLMVR 1221
             Y+ +G     L L  E +    RP   T V  ++A +    L +GR L+ L  R
Sbjct: 251  AYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWR 305



 Score = 70.9 bits (172), Expect = 6e-10
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
 Frame = +1

Query: 820  CVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVA 999
            C+ PT +   +++ S      +  G+++H      GF  +  + T L+++Y  C S+  A
Sbjct: 70   CLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSA 129

Query: 1000 RALFERLREKRVVSWNAIITGYAMHGLAIEALDLFERMRKEAR-PDLITFVGVLAACSRG 1176
            R LF+R+ +  +  WN +I GYA +G    A+ L+ +M      PD  TF  VL AC+  
Sbjct: 130  RLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189

Query: 1177 RLLDEGRALYSLMVR 1221
              ++ GR ++  +V+
Sbjct: 190  SAIEHGREIHEHVVQ 204


>ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544922|gb|EEF46437.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  472 bits (1214), Expect = e-131
 Identities = 233/327 (71%), Positives = 268/327 (81%)
 Frame = +1

Query: 211  FPPSPTSYCYTSLLQSCIAAKALRPGKQLHAQLCQLGVAYNQDLATKLVHFYSVCNSLRN 390
            F  + T   Y + LQSCI  KAL PGKQLHA LC +G+ +++ LA KLV+ Y +CNSL  
Sbjct: 81   FSFNQTPSYYAAFLQSCITQKALIPGKQLHASLCHVGLQFDRVLAPKLVNLYCICNSLCE 140

Query: 391  AHQLFDKIPKGNLFLWNVLIQGYAWNGPHEDSISLYHQMLEYGLKPDNFTLPFVLKACSA 570
            A  LFDKIPK NLFLWNVLI+GYAW GP+E SI LY+++ +YGL PDNFT PFVLKACSA
Sbjct: 141  ARLLFDKIPKRNLFLWNVLIRGYAWYGPYEASIQLYYKIFDYGLVPDNFTFPFVLKACSA 200

Query: 571  LSAIGEGRSIHEYVIRSGWERDVFVGAALIDMYAKCGCVMDARHVFDKIVVRDAVLWNSM 750
            LSAI +GR IHE V+RSGWERDVFVGAALIDMY+KCGCV +AR VF K  VRDAVLWNSM
Sbjct: 201  LSAIEDGRLIHEQVMRSGWERDVFVGAALIDMYSKCGCVDNAREVFHKFPVRDAVLWNSM 260

Query: 751  LAAYAQNGHPDESLSLCCEMAAMCVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGF 930
            LAAY+QNG PD+SL+LC EM    VRPTEATLVTVIS+SADIA LP GRE+HGF WR  F
Sbjct: 261  LAAYSQNGKPDKSLALCSEMVLAGVRPTEATLVTVISASADIAALPQGRELHGFAWRRRF 320

Query: 931  QSNDKVKTALIDMYAKCGSVKVARALFERLREKRVVSWNAIITGYAMHGLAIEALDLFER 1110
            +SNDKVKT LIDMYAKCG++KVA+ LFE+LR+K VVSWNAIITGYAMHG + E L LF+R
Sbjct: 321  ESNDKVKTTLIDMYAKCGTMKVAQNLFEQLRDKNVVSWNAIITGYAMHGYSNEVLILFDR 380

Query: 1111 MRKEARPDLITFVGVLAACSRGRLLDE 1191
            MR+EA+PD ITFVGVL ACS G LLD+
Sbjct: 381  MREEAKPDHITFVGVLLACSNGGLLDK 407



 Score = 60.5 bits (145), Expect = 9e-07
 Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = +1

Query: 892  GREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVARALFERLREKRVVSWNAIITGYAM 1071
            G+++H      G Q +  +   L+++Y  C S+  AR LF+++ ++ +  WN +I GYA 
Sbjct: 106  GKQLHASLCHVGLQFDRVLAPKLVNLYCICNSLCEARLLFDKIPKRNLFLWNVLIRGYAW 165

Query: 1072 HGLAIEALDLFERMRKEAR-PDLITFVGVLAACSRGRLLDEGRALYSLMVR 1221
            +G    ++ L+ ++      PD  TF  VL ACS    +++GR ++  ++R
Sbjct: 166  YGPYEASIQLYYKIFDYGLVPDNFTFPFVLKACSALSAIEDGRLIHEQVMR 216


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
            chloroplastic-like [Cucumis sativus]
            gi|449522468|ref|XP_004168248.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g46790,
            chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  461 bits (1186), Expect = e-127
 Identities = 225/327 (68%), Positives = 265/327 (81%)
 Frame = +1

Query: 238  YTSLLQSCIAAKALRPGKQLHAQLCQLGVAYNQDLATKLVHFYSVCNSLRNAHQLFDKIP 417
            Y SLLQSC+  KA+ PGKQLHA++CQ+G+++N  LATKLV+ Y +CNSL NAH LFD+I 
Sbjct: 4    YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 418  KGNLFLWNVLIQGYAWNGPHEDSISLYHQMLEYGLKPDNFTLPFVLKACSALSAIGEGRS 597
            K NLFLWNV+I+GYAWNGP+E +ISLY+QM +YGL PD FT PFVLKACSALSA+ EG+ 
Sbjct: 64   KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 598  IHEYVIRSGWERDVFVGAALIDMYAKCGCVMDARHVFDKIVVRDAVLWNSMLAAYAQNGH 777
            IH+ VIRSG E DVFVGAALIDMYAKCGCV  AR VFDKI  RD V WNSMLA Y+QNG 
Sbjct: 124  IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 778  PDESLSLCCEMAAMCVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQSNDKVKTA 957
            PDESL+LC  MA   ++PTE T V  I++SAD   LP G+E+HG+ WRHGF+SNDKVKTA
Sbjct: 184  PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 958  LIDMYAKCGSVKVARALFERLREKRVVSWNAIITGYAMHGLAIEALDLFERMRKEARPDL 1137
            L+DMYAK GSV VAR+LFE L EKRVVSWNA+ITGYAMHG A EALDLF+ M+ +  PD 
Sbjct: 244  LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVLPDH 303

Query: 1138 ITFVGVLAACSRGRLLDEGRALYSLMV 1218
            ITFVGVLAACS G LL+EG+  +  M+
Sbjct: 304  ITFVGVLAACSHGGLLNEGKMHFRSMI 330



 Score =  143 bits (360), Expect = 1e-31
 Identities = 92/307 (29%), Positives = 155/307 (50%), Gaps = 3/307 (0%)
 Frame = +1

Query: 223  PTSYCYTSLLQSCIAAKALRPGKQLHAQLCQLGVAYNQDLATKLVHFYSVCNSLRNAHQL 402
            P  + +  +L++C A  A+  GK++H  + + G+  +  +   L+  Y+ C  + +A Q+
Sbjct: 100  PDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQV 159

Query: 403  FDKIPKGNLFLWNVLIQGYAWNGPHEDSISLYHQMLEYGLKPDNFTLPFVLKACSALSAI 582
            FDKI + ++  WN ++  Y+ NG  ++S++L   M   GLKP   T    + A +    +
Sbjct: 160  FDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLL 219

Query: 583  GEGRSIHEYVIRSGWERDVFVGAALIDMYAKCGCVMDARHVFDKIVVRDAVLWNSMLAAY 762
             +G+ +H Y  R G+E +  V  AL+DMYAK G V  AR +F+ +  +  V WN+M+  Y
Sbjct: 220  PQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGY 279

Query: 763  AQNGHPDESLSLCCEMAAMCVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQSND 942
            A +GH +E+L L  EM    V P   T V V+++ +    L  G+ +H       F    
Sbjct: 280  AMHGHANEALDLFKEMKGK-VLPDHITFVGVLAACSHGGLLNEGK-MHFRSMISDFNIWP 337

Query: 943  KVK--TALIDMYAKCGSVKVARALFERLR-EKRVVSWNAIITGYAMHGLAIEALDLFERM 1113
             V+  T +ID+   CG ++ A  L   +R E     W A++    +HG  +E  +L    
Sbjct: 338  TVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHG-NVEMGELALEK 396

Query: 1114 RKEARPD 1134
              E  PD
Sbjct: 397  LVELEPD 403



 Score = 67.4 bits (163), Expect = 7e-09
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
 Frame = +1

Query: 892  GREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVARALFERLREKRVVSWNAIITGYAM 1071
            G+++H    + G   N  + T L+++Y  C S+  A  LF+R+ ++ +  WN +I GYA 
Sbjct: 20   GKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAW 79

Query: 1072 HGLAIEALDLFERMRKEAR-PDLITFVGVLAACSRGRLLDEGRALYSLMVR 1221
            +G    A+ L+ +MR     PD  TF  VL ACS    ++EG+ ++  ++R
Sbjct: 80   NGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIR 130